Paenibacillus polymyxa strain J

Gram-positiveRodMotileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus polymyxa strain J is a Gram-positive, rod-shaped bacterium that exhibits facultative anaerobic growth, allowing it to thrive in various oxygen conditions. This strain is a chemoheterotroph, deriving energy from organic compounds. It is motile, possessing flagella that facilitate movement, and it has a mesophilic temperature range, with an optimal growth temperature of 37°C. This bacterium is free-living and can be found in multiple habitats, indicating its adaptability to diverse environmental conditions. Notably, Paenibacillus polymyxa strain J has been associated with several hosts, including Gallus gallus (chickens), various plant species such as Triticum aestivum (wheat), Solanum lycopersicum (tomato), Zea mays subsp. mays (maize), Arachis hypogaea (peanut), and Arabidopsis thaliana. This wide host range suggests that it may play a significant role in plant and animal interactions, particularly in agricultural contexts. Additionally, the strain is capable of sporulation, which may enhance its survival in adverse environments by allowing it to enter a dormant state. The presence of a single replicon in its genetic makeup further characterizes its genomic organization. Collectively, these traits indicate that Paenibacillus polymyxa strain J could be a valuable organism in biotechnological applications, such as promoting plant growth or enhancing soil health, due to its beneficial relationships with various hosts.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus polymyxa
Strainstrain J

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Paenibacillus polymyxa strain J
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Gallus gallus, Viridiplantae, Triticum aestivum
Cell arrangementNot Available
SporulationSporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Paenibacillus polymyxa strain J chromosome, complete genome.

Gene Summary

Adenine Count

1562140 bp

Thymine Count

1561860 bp

Guanine Count

1313754 bp

Cytosine Count

1319184 bp

Genome Length

5756938 bp

Protein-coding Genes

5006 genes

Non-Coding Genes

240 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rnase p modulator rnpmAOU00_RS22850Not AvailablePositive5037451 - 503775911471.1
ribosomal l7ae/l30e/s12e/gadd45 family proteinAOU00_RS22855Not AvailablePositive5037752 - 503807511657.5
translation initiation factor if-2AOU00_RS22860Not AvailablePositive5038068 - 504062392097.7
30s ribosome-binding factor rbfaAOU00_RS22865Not AvailablePositive5040644 - 504099413157.0
bifunctional oligoribonuclease/pap phosphatase nrnaAOU00_RS22870Not AvailablePositive5041046 - 504202335742.7
trna pseudouridine(55) synthase trubAOU00_RS22875Not AvailablePositive5042020 - 504295534772.2
bifunctional riboflavin kinase/fad synthetaseAOU00_RS22880Not AvailablePositive5043014 - 504395234739.7
30s ribosomal protein s15AOU00_RS22885Not AvailablePositive5044085 - 504435410522.8
polyribonucleotide nucleotidyltransferaseAOU00_RS22890Not AvailablePositive5044569 - 504667176603.8
polysaccharide deacetylase family proteinAOU00_RS22895Not AvailablePositive5046902 - 504790637198.7

Displaying genes 4691 – 4700 of 5246 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

385 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 385 metabolites

Health Effects

No health effects information available for this bacterium.