Paenibacillus polymyxa strain J

Gram-positiveRodMotileFacultative anaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Paenibacillaceae

Genus

Paenibacillus

Description

Paenibacillus polymyxa strain J is a Gram-positive, rod-shaped bacterium characterized by its ability to sporulate and thrive as a chemoheterotroph. This strain exhibits optimal growth at a temperature of 37.0°C and demonstrates facultative anaerobic respiration, allowing it to adapt to varying oxygen levels in its environment. The capability to sporulate is significant for survival, enabling the bacterium to endure unfavorable conditions by forming resilient spores. As a chemoheterotroph, P. polymyxa strain J relies on organic compounds for energy and carbon, which highlights its role in nutrient cycling within diverse habitats. The organism's versatility in energy utilization and oxygen dependence indicates its potential presence in a range of environments, from soil to more complex ecosystems. Understanding the physiological traits of P. polymyxa strain J not only sheds light on its metabolic capabilities but also emphasizes its ecological role in soil health and plant interactions. Its ability to adapt to different habitats and conditions suggests that this bacterium may contribute to biogeochemical processes, particularly in the degradation of organic materials and the promotion of soil fertility. Such traits position P. polymyxa strain J as a potential candidate for applications in agriculture and bioremediation, where its metabolic versatility could be harnessed for enhancing soil quality and ecosystem resilience.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyPaenibacillaceae
GenusPaenibacillus
SpeciesPaenibacillus polymyxa
Strainstrain J

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranesNot Available
Image of Paenibacillus polymyxa strain J
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationSporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Paenibacillus polymyxa strain J


Gene Summary

Adenine Count

1562140 bp

Thymine Count

1561860 bp

Guanine Count

1313754 bp

Cytosine Count

1319184 bp

Genome Length

5756938 bp

Protein-coding Genes

5006 genes

Non-Coding Genes

240 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AntirepressorAOU00_RS25565Not Available-250131 - 25084427234.5
tyrosinase family proteinAOU00_RS01175Not Available+251292 - 25238340760.9
AntirepressorAOU00_RS01180Not Available-253144 - 25378824670.1
Cro-like transcriptional regulatorAOU00_RS01185Not Available-253987 - 2541937836.58
Putative spbeta phage repressorAOU00_RS01190Not Available+254292 - 25485821693.9
Hypothetical proteinAOU00_RS01195Not Available-255075 - 25567121883.1
Putative minor structural proteinAOU00_RS01200Not Available-255736 - 25785077898.2
phage distal tail proteinAOU00_RS01205Not Available-257895 - 25853323554.3
right-handed parallel beta-helix repeat-containing proteinAOU00_RS01210Not Available-258550 - 25991748995.1
Major capsid proteinAOU00_RS01215Not Available-259927 - 26033714407.1

Displaying genes 1 – 10 of 5246 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

385 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da

Displaying 1–10 of 385 metabolites