Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Rhodanobacteraceae
Genus
Dokdonella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Rhodanobacteraceae |
| Genus | Dokdonella |
| Species | Dokdonella koreensis |
| Strain | DS-123 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
659180 bp
Thymine Count
659388 bp
Guanine Count
1564911 bp
Cytosine Count
1563140 bp
Genome Length
4446619 bp
Protein-coding Genes
3590 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| carboxylate-amine ligase | I596_RS03775 | A8I5N7 | Negative | 968595 - 969809 | 44408.9 |
| hypothetical protein | I596_RS03780 | Not Available | Negative | 969984 - 973415 | 118704.0 |
| had family hydrolase | I596_RS03785 | Not Available | Negative | 973590 - 974309 | 26142.3 |
| ggdef domain-containing protein | I596_RS03790 | Not Available | Negative | 974351 - 975511 | 41026.6 |
| udp-n-acetylmuramoyl-l-alanine--d-glutamate ligase | I596_RS03795 | Q4UWX9 | Negative | 975832 - 977226 | 48563.0 |
| udp-n-acetyl-alpha-d-muramoyl-l-alanyl-l- glutamate epimerase | I596_RS03800 | P0DQD8 | Negative | 977229 - 978566 | 48725.2 |
| hypothetical protein | I596_RS03805 | Not Available | Negative | 978553 - 978948 | 13580.9 |
| bifunctional aspartate kinase/diaminopimelate decarboxylase | I596_RS03810 | O27390 | Negative | 979014 - 981623 | 94269.0 |
| single-stranded dna-binding protein | I596_RS03815 | Q83EP4 | Positive | 981923 - 982438 | 17797.6 |
| cap domain-containing protein | I596_RS03820 | Not Available | Negative | 982478 - 983617 | 38490.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
