Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Rhodanobacteraceae
Genus
Dokdonella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Rhodanobacteraceae |
| Genus | Dokdonella |
| Species | Dokdonella koreensis |
| Strain | DS-123 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
659180 bp
Thymine Count
659388 bp
Guanine Count
1564911 bp
Cytosine Count
1563140 bp
Genome Length
4446619 bp
Protein-coding Genes
3590 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pseudouridine synthase | I596_RS19115 | Q47417 | Positive | 4350065 - 4350823 | 28177.8 |
| yajq family cyclic di-gmp-binding protein | I596_RS17595 | Q7WBC1 | Positive | 4350879 - 4351361 | 17893.5 |
| alternative ribosome rescue aminoacyl-trna hydrolase arfb | I596_RS17600 | P45388 | Positive | 4351385 - 4351810 | 15803.0 |
| lysophospholipid acyltransferase family protein | I596_RS17605 | Not Available | Positive | 4351807 - 4352400 | 22162.0 |
| dmse family decaheme c-type cytochrome | I596_RS17610 | P0DSN3 | Positive | 4352735 - 4353799 | 37273.4 |
| mtrb/piob family outer membrane beta-barrel protein | I596_RS17615 | Not Available | Positive | 4353810 - 4356377 | 94913.5 |
| c-type cytochrome | I596_RS17620 | Not Available | Positive | 4356385 - 4357098 | 25138.9 |
| abc transporter permease | I596_RS17625 | P0AFN8 | Negative | 4357135 - 4357917 | 28333.6 |
| abc transporter atp-binding protein | I596_RS17630 | P36879 | Negative | 4357914 - 4358849 | 34241.1 |
| ferredoxin--nadp reductase | I596_RS17635 | P23101 | Positive | 4358936 - 4359682 | 27063.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
