Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Rhodanobacteraceae
Genus
Dokdonella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Rhodanobacteraceae |
| Genus | Dokdonella |
| Species | Dokdonella koreensis |
| Strain | DS-123 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
659180 bp
Thymine Count
659388 bp
Guanine Count
1564911 bp
Cytosine Count
1563140 bp
Genome Length
4446619 bp
Protein-coding Genes
3590 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyase | I596_RS16090 | B2FU49 | Positive | 3939981 - 3940796 | 30027.3 |
| efflux transporter outer membrane subunit | I596_RS16095 | P15727 | Positive | 3941087 - 3942535 | 50722.5 |
| efflux rnd transporter periplasmic adaptor subunit | I596_RS16100 | Q57500 | Positive | 3942548 - 3943714 | 41657.8 |
| efflux rnd transporter permease subunit | I596_RS16105 | Q57124 | Positive | 3943814 - 3946930 | 111520.0 |
| nadph-dependent 7-cyano-7-deazaguanine reductase quef | I596_RS16110 | B4SLB7 | Positive | 3946980 - 3947810 | 30646.4 |
| lysm peptidoglycan-binding domain-containing protein | I596_RS16115 | Not Available | Positive | 3948027 - 3948344 | 11202.0 |
| hypothetical protein | I596_RS18820 | Not Available | Positive | 3948372 - 3948857 | 16055.1 |
| m1 family metallopeptidase | I596_RS16125 | P52922 | Negative | 3948981 - 3950840 | 69140.2 |
| luxr c-terminal-related transcriptional regulator | I596_RS16130 | Q6NCZ5 | Positive | 3950996 - 3951772 | 28660.5 |
| Trna-thr | Not Available | Not Available | Positive | 3951763 - 3951834 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
