Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Rhodanobacteraceae
Genus
Dokdonella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Rhodanobacteraceae |
| Genus | Dokdonella |
| Species | Dokdonella koreensis |
| Strain | DS-123 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
659180 bp
Thymine Count
659388 bp
Guanine Count
1564911 bp
Cytosine Count
1563140 bp
Genome Length
4446619 bp
Protein-coding Genes
3590 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system minor pseudopilin gspi | I596_RS12895 | Q00516 | Positive | 3141061 - 3141435 | 13486.2 |
| type ii secretion system minor pseudopilin gspj | I596_RS12900 | Q00517 | Positive | 3141432 - 3142076 | 23275.0 |
| type ii secretion system minor pseudopilin gspk | I596_RS12905 | Not Available | Positive | 3142073 - 3143074 | 35661.8 |
| response regulator transcription factor | I596_RS12910 | Not Available | Negative | 3143088 - 3143786 | 25895.3 |
| phosphatase pap2 family protein | I596_RS12915 | Not Available | Positive | 3144168 - 3144872 | 25669.5 |
| phosphoethanolamine transferase | I596_RS12920 | P30845 | Positive | 3144869 - 3146569 | 61320.1 |
| hamp domain-containing sensor histidine kinase | I596_RS12925 | P08401 | Positive | 3146644 - 3147930 | 46370.1 |
| eama family transporter | I596_RS12930 | P29939 | Negative | 3148128 - 3148562 | 15392.0 |
| glycosyltransferase family 39 protein | I596_RS12935 | Not Available | Positive | 3148729 - 3150450 | 62431.9 |
| enoyl-coa hydratase/isomerase family protein | I596_RS12940 | A4YI89 | Negative | 3150478 - 3151260 | 27403.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
