Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Rhodanobacteraceae
Genus
Dokdonella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Rhodanobacteraceae |
| Genus | Dokdonella |
| Species | Dokdonella koreensis |
| Strain | DS-123 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
659180 bp
Thymine Count
659388 bp
Guanine Count
1564911 bp
Cytosine Count
1563140 bp
Genome Length
4446619 bp
Protein-coding Genes
3590 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type i-c crispr-associated protein cas7/csd2 | I596_RS11600 | D4GQN6 | Negative | 2847993 - 2848844 | 30670.0 |
| type i-c crispr-associated protein cas8c/csd1 | I596_RS11605 | Not Available | Negative | 2848881 - 2850776 | 70548.2 |
| type i-c crispr-associated protein cas5c | I596_RS11610 | Not Available | Negative | 2850773 - 2851489 | 27412.7 |
| crispr-associated helicase cas3' | I596_RS11615 | Not Available | Negative | 2851486 - 2853990 | 92084.1 |
| crispr-associated endonuclease cas3'' | I596_RS18495 | Not Available | Negative | 2854109 - 2854606 | 18792.8 |
| translational gtpase typa | I596_RS11620 | P0A3B2 | Positive | 2855075 - 2856904 | 67585.4 |
| tetratricopeptide repeat protein | I596_RS11625 | Not Available | Positive | 2857805 - 2859349 | 54473.2 |
| lysr family transcriptional regulator | I596_RS11630 | Not Available | Negative | 2859358 - 2860338 | 35873.8 |
| form i ribulose bisphosphate carboxylase large subunit | I596_RS11635 | Q2YB78 | Positive | 2860483 - 2861970 | 54836.4 |
| ribulose bisphosphate carboxylase small subunit | I596_RS11640 | Q59102 | Positive | 2861995 - 2862411 | 16151.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
