Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Rhodanobacteraceae
Genus
Dokdonella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Rhodanobacteraceae |
| Genus | Dokdonella |
| Species | Dokdonella koreensis |
| Strain | DS-123 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
659180 bp
Thymine Count
659388 bp
Guanine Count
1564911 bp
Cytosine Count
1563140 bp
Genome Length
4446619 bp
Protein-coding Genes
3590 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux rnd transporter periplasmic adaptor subunit | I596_RS10405 | P64176 | Positive | 2564621 - 2565982 | 47006.6 |
| macb family efflux pump subunit | I596_RS10410 | Q2KVS6 | Positive | 2565985 - 2567946 | 70159.7 |
| efflux transporter outer membrane subunit | I596_RS10415 | Q2EHL7 | Positive | 2568229 - 2569647 | 50636.8 |
| type ii toxin-antitoxin system rele/pare family toxin | I596_RS10420 | Not Available | Positive | 2569771 - 2570259 | 18196.8 |
| class i sam-dependent methyltransferase | I596_RS10425 | Not Available | Negative | 2570264 - 2570869 | 22553.1 |
| polyhydroxyalkanoate depolymerase | I596_RS10430 | Not Available | Positive | 2570985 - 2572238 | 46990.4 |
| aldo/keto reductase | I596_RS10435 | P77735 | Positive | 2572267 - 2573211 | 33875.4 |
| universal stress protein | I596_RS10440 | Not Available | Positive | 2573314 - 2574210 | 31862.0 |
| peptidylprolyl isomerase | I596_RS10445 | Not Available | Positive | 2574271 - 2575179 | 32701.3 |
| glutathione peroxidase | I596_RS10450 | O32770 | Negative | 2575201 - 2575683 | 17548.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
