Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Rhodanobacteraceae
Genus
Dokdonella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Rhodanobacteraceae |
| Genus | Dokdonella |
| Species | Dokdonella koreensis |
| Strain | DS-123 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
659180 bp
Thymine Count
659388 bp
Guanine Count
1564911 bp
Cytosine Count
1563140 bp
Genome Length
4446619 bp
Protein-coding Genes
3590 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine(55) synthase trub | I596_RS06255 | B0RRB6 | Positive | 1586390 - 1587319 | 32668.6 |
| 30s ribosomal protein s15 | I596_RS06260 | Q1GXD3 | Positive | 1587446 - 1587715 | 10371.4 |
| polyribonucleotide nucleotidyltransferase | I596_RS06265 | B2FN86 | Positive | 1587743 - 1589845 | 75566.0 |
| carboxypeptidase regulatory-like domain-containing protein | I596_RS06270 | Not Available | Positive | 1590306 - 1593503 | 117518.0 |
| nucleotide 5'-monophosphate nucleosidase ppnn | I596_RS06275 | P0ADS0 | Positive | 1593636 - 1595030 | 51287.0 |
| dmt family transporter | I596_RS06280 | Not Available | Positive | 1595062 - 1595955 | 31577.2 |
| voc family protein | I596_RS06285 | Not Available | Positive | 1595991 - 1596407 | 15167.9 |
| oligopeptide:h+ symporter | I596_RS06290 | O01840 | Negative | 1596469 - 1598043 | 57203.0 |
| yaii/yqxd family protein | I596_RS06295 | A4G1V0 | Positive | 1598226 - 1598678 | 16201.5 |
| urocanate hydratase | I596_RS06300 | A6VDL7 | Negative | 1598785 - 1600458 | 60489.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
