Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Rhodanobacteraceae
Genus
Dokdonella
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Rhodanobacteraceae |
| Genus | Dokdonella |
| Species | Dokdonella koreensis |
| Strain | DS-123 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
659180 bp
Thymine Count
659388 bp
Guanine Count
1564911 bp
Cytosine Count
1563140 bp
Genome Length
4446619 bp
Protein-coding Genes
3590 genes
Non-Coding Genes
58 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isovaleryl-coa dehydrogenase | I596_RS05390 | Q75IM9 | Negative | 1384548 - 1385705 | 41803.3 |
| ribokinase | I596_RS05395 | P44331 | Positive | 1385914 - 1386819 | 29152.1 |
| hypothetical protein | I596_RS18695 | Not Available | Negative | 1387299 - 1387472 | 6141.9 |
| glu/leu/phe/val dehydrogenase dimerization domain-containing protein | I596_RS05400 | P13154 | Negative | 1387549 - 1388652 | 40218.2 |
| hypothetical protein | I596_RS05405 | Not Available | Positive | 1388882 - 1389478 | 21398.5 |
| outer membrane protein assembly factor bamd | I596_RS05410 | Q9PEU0 | Negative | 1389504 - 1390421 | 34954.8 |
| 23s rrna pseudouridine(1911/1915/1917) synthase rlud | I596_RS05415 | Q8P682 | Positive | 1390420 - 1391388 | 35345.4 |
| peptidoglycan editing factor pgef | I596_RS05420 | P33663 | Positive | 1391385 - 1392158 | 26618.7 |
| murein l,d-transpeptidase catalytic domain family protein | I596_RS05425 | Not Available | Negative | 1392232 - 1392966 | 26049.9 |
| l,d-transpeptidase | I596_RS05430 | Not Available | Negative | 1393074 - 1394327 | 42459.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
