Thermococcus pacificus strain P-4

Gram-negative

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Thermococci

Order

Thermococcales

Family

Thermococcaceae

Genus

Thermococcus

Description

Thermococcus pacificus strain P-4 is a Gram-negative archaeon characterized by its presence of flagella, which contributes to its motility. This organism possesses a single replicon, indicating a streamlined genomic architecture. The specific accession number for this strain is NZ_CP015102.1, which provides a reference for genomic studies and further research. As a member of the genus Thermococcus, T. pacificus strain P-4 is adapted to extreme environments, typically thriving in high-temperature habitats such as hydrothermal vents. The presence of flagella is significant for its ecological role, as it enables effective movement toward favorable conditions and nutrient sources in its environment. This motility may also play a crucial role in its interactions with other microorganisms and its ability to colonize specific niches within these extreme habitats. The unique traits of Thermococcus pacificus strain P-4 highlight its adaptability and ecological significance in thermophilic ecosystems. Understanding its genomic structure and motility mechanisms may provide insights into the survival strategies of extremophiles and their contributions to biogeochemical processes in high-temperature environments.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassThermococci
OrderThermococcales
FamilyThermococcaceae
GenusThermococcus
SpeciesThermococcus pacificus
Strainstrain P-4

Profile

Physiology
Gram staining propertiesNegative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thermococcus pacificus strain P-4 chromosome, complete genome.

Gene Summary

Adenine Count

408373 bp

Thymine Count

408737 bp

Guanine Count

485297 bp

Cytosine Count

483266 bp

Genome Length

1785673 bp

Protein-coding Genes

1955 genes

Non-Coding Genes

52 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
c/d box methylation guide ribonucleoprotein complex anop56 subunitA3L08_RS00550Not AvailableNegative85808 - 8709448316.6
ribose 1,5-bisphosphate isomeraseA3L08_RS00555Not AvailableNegative87314 - 8828236199.8
plp-dependent aminotransferase family proteinA3L08_RS00560Not AvailablePositive88523 - 8977947618.0
gamma-glutamyl-gamma-aminobutyrate hydrolase family proteinA3L08_RS00565Not AvailablePositive89861 - 9074833133.3
spl family radical sam proteinA3L08_RS00570Not AvailableNegative90675 - 9151732682.9
osmc family proteinA3L08_RS00575Not AvailablePositive91576 - 9198615365.7
neutral amino acid naat transporter snataA3L08_RS00580Not AvailablePositive92015 - 9266823514.7
family 4a encapsulin nanocompartment shell proteinA3L08_RS00585Not AvailablePositive92773 - 9305410243.3
triphosphoribosyl-dephospho-coa synthaseA3L08_RS00590Not AvailableNegative93038 - 9396434885.4
hypothetical proteinA3L08_RS00595Not AvailableNegative93965 - 941928819.42

Displaying genes 111 – 120 of 2007 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.