Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 28RC1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1377407 bp
Thymine Count
1371115 bp
Guanine Count
1411082 bp
Cytosine Count
1402094 bp
Genome Length
5561698 bp
Protein-coding Genes
4589 genes
Non-Coding Genes
1027 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tryptophanase | ARC77_RS15455 | Not Available | Positive | 2964667 - 2966082 | 52792.4 |
| low affinity tryptophan permease tnab | ARC77_RS15460 | Not Available | Positive | 2966173 - 2967420 | 45198.3 |
| multidrug efflux mfs transporter mdtl | ARC77_RS15465 | Not Available | Positive | 2967552 - 2968727 | 41614.3 |
| hth-type transcriptional regulator yidz | ARC77_RS15470 | Not Available | Positive | 2968702 - 2969661 | 36916.9 |
| 4'-phosphopantetheinyl transferase superfamily protein | ARC77_RS15475 | Not Available | Positive | 2969818 - 2970567 | 27666.3 |
| class i chromate reductase yief | ARC77_RS15480 | Not Available | Positive | 2970589 - 2971155 | 20376.8 |
| adenine permease adep | ARC77_RS15485 | Not Available | Negative | 2971209 - 2972546 | 46829.7 |
| 6-phosphogluconate phosphatase | ARC77_RS15490 | Not Available | Positive | 2972712 - 2973377 | 24827.9 |
| t3ss effector espy4 | ARC77_RS15495 | Not Available | Negative | 2973514 - 2975922 | 93165.8 |
| hypothetical protein | ARC77_RS15500 | Not Available | Positive | 2976223 - 2976894 | 26242.1 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





