Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 28RC1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1377407 bp
Thymine Count
1371115 bp
Guanine Count
1411082 bp
Cytosine Count
1402094 bp
Genome Length
5561698 bp
Protein-coding Genes
4589 genes
Non-Coding Genes
1027 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system lee effector espg | ARC77_RS15145 | Not Available | Positive | 2908708 - 2909853 | 42035.7 |
| sdia-regulated domain-containing protein | ARC77_RS15150 | Not Available | Positive | 2909981 - 2910799 | 31005.6 |
| duf1441 family protein | ARC77_RS33605 | Not Available | Negative | 2911174 - 2911239 | 2702.33 |
| duf1441 family protein | ARC77_RS33610 | Not Available | Negative | 2911250 - 2911355 | 3791.41 |
| duf1441 family protein | ARC77_RS34245 | Not Available | Positive | 2911535 - 2911708 | 6237.82 |
| carboxylate/amino acid/amine transporter | ARC77_RS15165 | Not Available | Positive | 2911819 - 2912742 | 33074.4 |
| lipoprotein nlpa | ARC77_RS15170 | Not Available | Negative | 2912746 - 2913564 | 29424.2 |
| protein yics | ARC77_RS15180 | Not Available | Positive | 2913786 - 2914079 | 11061.4 |
| purine ribonucleoside efflux pump nepi | ARC77_RS15185 | Not Available | Negative | 2914120 - 2915310 | 41853.5 |
| type ii toxin-antitoxin system rele/pare family toxin | ARC77_RS15195 | Not Available | Positive | 2915544 - 2915897 | 13498.2 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





