Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 28RC1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1377407 bp
Thymine Count
1371115 bp
Guanine Count
1411082 bp
Cytosine Count
1402094 bp
Genome Length
5561698 bp
Protein-coding Genes
4589 genes
Non-Coding Genes
1027 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system lee export apparatus protein escv | ARC77_RS15045 | Not Available | Negative | 2894255 - 2896282 | 75101.7 |
| type iii secretion system lee chaperone cesl | ARC77_RS15050 | Not Available | Negative | 2896279 - 2896632 | 13942.8 |
| type iii secretion system lee cytoprotective effector espz | ARC77_RS15055 | Not Available | Positive | 2896817 - 2897116 | 9656.61 |
| type iii secretion system inner rod subunit scti | ARC77_RS15060 | Not Available | Positive | 2897200 - 2897577 | 13272.8 |
| type iii secretion system lee inner membrane ring protein escj | ARC77_RS15065 | Not Available | Positive | 2897580 - 2898152 | 20758.1 |
| type iii secretion system lee switch protein sepd | ARC77_RS15070 | Not Available | Positive | 2898158 - 2898613 | 17562.0 |
| type iii secretion system lee outer membrane ring protein escc | ARC77_RS15075 | Not Available | Positive | 2898613 - 2900151 | 56201.9 |
| sycd/lcrh family type iii secretion system chaperone cesd | ARC77_RS15080 | Not Available | Positive | 2900165 - 2900620 | 17503.7 |
| type iii secretion system lee transcriptional regulator grla | ARC77_RS15085 | Not Available | Negative | 2901004 - 2901417 | 16085.4 |
| type iii secretion system lee grla-binding negative regulator grlr | ARC77_RS15090 | Not Available | Negative | 2901472 - 2901843 | 13929.9 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





