Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Enterobacterales
Family
Enterobacteriaceae
Genus
Escherichia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Enterobacterales |
| Family | Enterobacteriaceae |
| Genus | Escherichia |
| Species | Escherichia coli |
| Strain | strain 28RC1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 2 |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Facultative anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Bos taurus |
| Cell arrangement | Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1377407 bp
Thymine Count
1371115 bp
Guanine Count
1411082 bp
Cytosine Count
1402094 bp
Genome Length
5561698 bp
Protein-coding Genes
4589 genes
Non-Coding Genes
1027 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1441 family protein | ARC77_RS32825 | Not Available | Positive | 2875947 - 2876254 | 11061.3 |
| type iii secretion system lee effector espf | ARC77_RS14950 | Not Available | Negative | 2876494 - 2877240 | 25244.1 |
| type iii secretion system lee needle protein cochaperone escg | ARC77_RS14955 | Not Available | Negative | 2877325 - 2877603 | 10280.4 |
| type iii secretion system lee needle filament protein escf | ARC77_RS14960 | Not Available | Negative | 2877609 - 2877830 | 8127.69 |
| lcrr family type iii secretion system chaperone cesd2 | ARC77_RS14965 | Not Available | Negative | 2877866 - 2878273 | 15813.8 |
| type iii secretion system lee translocon pore-forming subunit espb | ARC77_RS14970 | Not Available | Negative | 2878280 - 2879218 | 32632.4 |
| type iii secretion system lee translocon pore-forming subunit espd | ARC77_RS14975 | Not Available | Negative | 2879239 - 2880363 | 39085.5 |
| type iii secretion system lee translocon filament protein espa | ARC77_RS14980 | Not Available | Negative | 2880376 - 2880954 | 20575.2 |
| type iii secretion system lee gatekeeper sepl | ARC77_RS14985 | Not Available | Negative | 2881013 - 2882068 | 39954.0 |
| type iii secretion system lee inner membrane ring protein escd | ARC77_RS14990 | Not Available | Positive | 2882211 - 2883431 | 45261.8 |
Pathways
1427 pathways
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Gi disease | Causes | PMC11149725 |
| Utis | Causes | PMC11434687 |
| Colorectal cancer | Causes | PMC12198655 |
| Pyogenic liver abscesses | Causes | PMC12392612 |
| Uti | Causes | PMC13014981 |
| Colibacillosis | Causes | PMC13255289 |
| Enteric infections | Causes | PMC13255289 |
| Foodborne infections | Causes | PMC13255289 |
| Clinical mastitis | Causes | PMC13293316 |
| Diarrhea | Causes | PMC3035056 |





