Escherichia coli strain 28RC1

Gram-negativeRodMotileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Escherichia

Description

Escherichia coli strain 28RC1 is a Gram-negative, rod-shaped bacterium that typically exists in pairs or as single cells. This strain thrives optimally at a temperature of 37.0°C, which is consistent with the normal human body temperature, indicating its adaptation to a host-associated habitat. As a facultative anaerobe, E. coli strain 28RC1 can grow in both aerobic and anaerobic environments, allowing it to exploit a wide range of niches within the host. The ability to alternate between aerobic respiration and fermentation is an important trait for survival in diverse environments, particularly within the gastrointestinal tract of mammals, where oxygen levels can fluctuate significantly. The specific ecological role of E. coli strain 28RC1 within its host environment may involve contributing to nutrient metabolism and maintaining gut homeostasis, although such roles must be further explored to fully understand the implications of its presence. The adaptability of this strain underscores the dynamic nature of microbial interactions in host-associated ecosystems, emphasizing the importance of studying individual strains to elucidate their potential contributions to host health and microbiome stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusEscherichia
SpeciesEscherichia coli
Strainstrain 28RC1

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Escherichia coli strain 28RC1
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceNot Available
PathogenicityHuman

Genome Summary

Escherichia coli strain 28RC1


Gene Summary

Adenine Count

1377407 bp

Thymine Count

1371115 bp

Guanine Count

1411082 bp

Cytosine Count

1402094 bp

Genome Length

5561698 bp

Protein-coding Genes

4589 genes

Non-Coding Genes

1027 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinARC77_RS00010Not Available+589 - 8018259.02
Putative portal proteinARC77_RS33270Not Available+801 - 229552022.4
Head maturation proteaseARC77_RS33275Not Available+2240 - 425672420.9
Hypothetical proteinARC77_RS33280Not Available+4344 - 465810359.2
Hypothetical proteinARC77_RS33285Not Available+4662 - 494210259.7
Putative minor tail proteinARC77_RS32325Not Available+4945 - 556722059.9
phage tail terminator proteinARC77_RS00040Not Available+5564 - 597614418.6
Major tail protein vARC77_RS00045Not Available+5984 - 673727052.4
Putative minor tail proteinARC77_RS00050Not Available+6751 - 717315851.7
Putative minor tail proteinARC77_RS00055Not Available+7200 - 750211485.4

Displaying genes 1 – 10 of 5708 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites