Microbulbifer thermotolerans strain DAU221

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Microbulbiferaceae

Genus

Microbulbifer

Description

Microbulbifer thermotolerans strain DAU221 is a Gram-negative, rod-shaped bacterium isolated from deep-sea sediment. This organism is characterized by having a single replicon, which contributes to its genetic stability and adaptability in extreme environments. The strain is part of the genus Microbulbifer, which is known for its capacity to thrive in deep-sea habitats, particularly in sedimentary contexts. The ecological role of Microbulbifer thermotolerans strain DAU221 in deep-sea environments can be inferred from its habitat. Deep-sea sediments are often characterized by unique microbial communities that contribute to biogeochemical cycles, especially in nutrient cycling and organic matter degradation. The presence of this strain suggests that it may play a role in the degradation of organic materials in such extreme conditions, which can be vital for nutrient availability in these ecosystems. The accession number for this strain is NZ_CP014864.1, which refers to its genomic data and provides a resource for further studies on its metabolic capabilities and ecological interactions. Understanding the traits of Microbulbifer thermotolerans strain DAU221 can shed light on the adaptations required for survival in deep-sea sediments and the broader implications for microbial diversity and function in extreme environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyMicrobulbiferaceae
GenusMicrobulbifer
SpeciesMicrobulbifer thermotolerans
Strainstrain DAU221

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdeep-sea; deep-sea sediment
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbulbifer thermotolerans strain DAU221 chromosome, complete

Gene Summary

Adenine Count

855985 bp

Thymine Count

854517 bp

Guanine Count

1115310 bp

Cytosine Count

1112584 bp

Genome Length

3938396 bp

Protein-coding Genes

3283 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
16s rrna (cytosine(967)-c(5))-methyltransferase rsmbA3224_RS00105Not AvailableNegative26172 - 2747947516.9
methionyl-trna formyltransferaseA3224_RS00110Not AvailableNegative27480 - 2844234478.8
peptide deformylaseA3224_RS00115Not AvailableNegative28502 - 2900819302.2
lysm peptidoglycan-binding domain-containing proteinA3224_RS00120Not AvailablePositive29147 - 3022039710.8
dna-processing protein dpraA3224_RS00125Not AvailablePositive30308 - 3144739984.0
catalaseA3224_RS00130Not AvailablePositive31529 - 3297154301.6
5-(carboxyamino)imidazole ribonucleotide mutaseA3224_RS00135Not AvailablePositive33342 - 3385717902.7
l-threonylcarbamoyladenylate synthaseA3224_RS00140Not AvailablePositive33868 - 3443420168.2
oxygen-dependent coproporphyrinogen oxidaseA3224_RS00145Not AvailablePositive34490 - 3539834623.5
hypothetical proteinA3224_RS00150Not AvailablePositive35413 - 3585917153.7

Displaying genes 21 – 30 of 3283 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

54 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000433malonateC3H2O4Chemical structure of malonateNot available
Average102.0456Da
Monoisotopic101.9953086Da
BASm00005275-oxopentanoateC5H7O3Chemical structure of 5-oxopentanoateNot available
Average115.109Da
Monoisotopic115.040067665Da
BASm0000642S-adenosyl-4-methylsulfanyl-2-oxobutanoateC15H19N5O6SChemical structure of S-adenosyl-4-methylsulfanyl-2-oxobutanoateNot available
Average397.406Da
Monoisotopic397.105604055Da
BASm0000848hexanoateC6H11O2Chemical structure of hexanoateNot available
Average115.1503Da
Monoisotopic115.075904596Da
BASm00008763-hydroxypyruvateC3H3O4Chemical structure of 3-hydroxypyruvateNot available
Average103.054Da
Monoisotopic103.003682157Da
BASm0001279(6S)-5-methyl-5,6,7,8-tetrahydrofolateC20H23N7O6Chemical structure of (6S)-5-methyl-5,6,7,8-tetrahydrofolateNot available
Average457.4399Da
Monoisotopic457.1709815Da
BASm0001758(9Z,12Z)-octadecadienoateC18H31O2Chemical structure of (9Z,12Z)-octadecadienoateNot available
Average279.445Da
Monoisotopic279.2329538Da
BASm0001774tetradecanoateC14H27O2Chemical structure of tetradecanoateNot available
Average227.363Da
Monoisotopic227.2011051Da

Displaying 1–10 of 54 metabolites

Health Effects

No health effects information available for this bacterium.