Dyella thiooxydans strain ATSB10

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Dyella

Description

Dyella thiooxydans strain ATSB10 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is classified as mesophilic, with an optimal growth temperature of 29°C, indicating it thrives in moderate temperature conditions. The genomic information for Dyella thiooxydans strain ATSB10 is available under the accession number NZ_CP014841.1, which provides insights into its genetic makeup and potential metabolic capabilities. Notably, this strain possesses a single replicon, suggesting a streamlined genomic organization that may contribute to its adaptability in various environments. Understanding the characteristics of Dyella thiooxydans strain ATSB10 is crucial, as its metabolic functions may play a significant role in biogeochemical cycles, particularly in sulfur oxidation processes. This could have implications for its ecological niche, especially in habitats where sulfur compounds are prevalent. The aerobic nature of this bacterium indicates it may participate in the oxidation of sulfur compounds in oxic environments, potentially influencing nutrient cycling and energy flow in its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusDyella
SpeciesDyella thiooxydans
Strainstrain ATSB10

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyella thiooxydans strain ATSB10 chromosome, complete genome.

Gene Summary

Adenine Count

674491 bp

Thymine Count

679041 bp

Guanine Count

1436812 bp

Cytosine Count

1436828 bp

Genome Length

4227172 bp

Protein-coding Genes

3790 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthase family proteinATSB10_RS04270B7V5T6Negative911760 - 91322952312.7
acetyl-coa hydrolase/transferase c-terminal domain-containing proteinATSB10_RS04275P38942Positive913282 - 91522871034.4
flavodoxin-dependent (e)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthaseATSB10_RS04280B2FL74Positive915312 - 91657144508.5
bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-o-methyltransferase ubigATSB10_RS04285Not AvailablePositive916576 - 91725023410.1
tonb-dependent receptor domain-containing proteinATSB10_RS04290A5F4P6Negative917790 - 920717105104.0
leucyl/phenylalanyl-trna--protein transferaseATSB10_RS04295Q8PL03Negative921044 - 92177826926.3
gnat family n-acetyltransferaseATSB10_RS04300Not AvailableNegative921775 - 92294743490.1
duf2254 domain-containing proteinATSB10_RS04305Not AvailableNegative922944 - 92422445679.5
thioredoxin-disulfide reductaseATSB10_RS04310Q9KSS4Negative924308 - 92527334449.9
alanine dehydrogenaseATSB10_RS04315E1V931Positive925491 - 92654636655.5

Displaying genes 871 – 880 of 3849 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

210 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 210 metabolites

Health Effects

No health effects information available for this bacterium.