Dyella thiooxydans strain ATSB10

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Dyella

Description

Dyella thiooxydans strain ATSB10 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain is classified as mesophilic, with an optimal growth temperature of 29°C, indicating it thrives in moderate temperature conditions. The genomic information for Dyella thiooxydans strain ATSB10 is available under the accession number NZ_CP014841.1, which provides insights into its genetic makeup and potential metabolic capabilities. Notably, this strain possesses a single replicon, suggesting a streamlined genomic organization that may contribute to its adaptability in various environments. Understanding the characteristics of Dyella thiooxydans strain ATSB10 is crucial, as its metabolic functions may play a significant role in biogeochemical cycles, particularly in sulfur oxidation processes. This could have implications for its ecological niche, especially in habitats where sulfur compounds are prevalent. The aerobic nature of this bacterium indicates it may participate in the oxidation of sulfur compounds in oxic environments, potentially influencing nutrient cycling and energy flow in its ecosystem.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusDyella
SpeciesDyella thiooxydans
Strainstrain ATSB10

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyella thiooxydans strain ATSB10 chromosome, complete genome.

Gene Summary

Adenine Count

674491 bp

Thymine Count

679041 bp

Guanine Count

1436812 bp

Cytosine Count

1436828 bp

Genome Length

4227172 bp

Protein-coding Genes

3790 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
smr/muts family proteinATSB10_RS03870Not AvailableNegative839780 - 84033119930.2
5'/3'-nucleotidase sureATSB10_RS03875Q4UTP8Positive840487 - 84126627881.1
protein-l-isoaspartate(d-aspartate) o-methyltransferaseATSB10_RS03880Q4UTP9Positive841270 - 84195024557.7
yqaa family proteinATSB10_RS03885Not AvailablePositive841950 - 84255522565.7
peptidoglycan dd-metalloendopeptidase family proteinATSB10_RS03890P45682Positive842618 - 84353531665.6
mth938-like domain-containing proteinATSB10_RS03895Not AvailableNegative843554 - 84393113436.5
ribosome assembly rna-binding protein yhbyATSB10_RS03900P71376Negative843931 - 84422710776.0
23s rrna (uridine(2552)-2'-o)-methyltransferase rlmeATSB10_RS03905B4SRA0Positive844310 - 84496023797.7
atp-dependent zinc metalloprotease ftshATSB10_RS03910Q8X9L0Positive844957 - 84689169546.8
Trna-argNot AvailableNot AvailablePositive847122 - 847198Not Available

Displaying genes 791 – 800 of 3849 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

210 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 210 metabolites

Health Effects

No health effects information available for this bacterium.