Dyella thiooxydans strain ATSB10

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Rhodanobacteraceae

Genus

Dyella

Description

Dyella thiooxydans strain ATSB10 is a Gram-negative, rod-shaped bacterium that thrives under aerobic conditions, with an optimal growth temperature of 29.0°C. This strain, like others within the Dyella genus, is characterized by its unique metabolic capabilities, particularly in sulfur oxidation processes. The ability of Dyella thiooxydans to utilize sulfur compounds may contribute to its ecological roles in sulfur cycling, especially in environments where sulfur compounds are prevalent. The aerobic nature of this strain suggests its potential involvement in biogeochemical cycles, particularly in oxygen-rich environments. The optimal growth temperature of 29.0°C indicates that Dyella thiooxydans strain ATSB10 is well-suited for mesophilic conditions, which are common in various natural and anthropogenic habitats. Understanding the metabolic processes and environmental preferences of Dyella thiooxydans strain ATSB10 can provide insights into its ecological role, particularly in the context of bioremediation strategies in sulfur-rich environments or in the development of sustainable biotechnological applications that harness its sulfur-oxidizing capabilities. The strain's adaptation to aerobic conditions further emphasizes its potential significance in maintaining ecological balance in oxygenated habitats where sulfur compounds are abundant.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyRhodanobacteraceae
GenusDyella
SpeciesDyella thiooxydans
Strainstrain ATSB10

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Dyella thiooxydans strain ATSB10


Gene Summary

Adenine Count

674491 bp

Thymine Count

679041 bp

Guanine Count

1436812 bp

Cytosine Count

1436828 bp

Genome Length

4227172 bp

Protein-coding Genes

3790 genes

Non-Coding Genes

59 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
dnaa regulatory inactivator hdaATSB10_RS00010Q1C5P5+1 - 69625266.2
methyl-accepting chemotaxis proteinATSB10_RS00015Not Available+826 - 286570767.5
hypothetical proteinATSB10_RS00020Not Available+3025 - 361220691.6
hypothetical proteinATSB10_RS00025Not Available+3725 - 433621897.3
inositol monophosphatase family proteinATSB10_RS00030Q87BG1-4326 - 512928953.9
rna methyltransferaseATSB10_RS00035Q2NS29+5265 - 602927825.6
exopolysaccharide biosynthesis proteinATSB10_RS00040Not Available-6031 - 665121972.8
hemolysin family proteinATSB10_RS00045P74409-6669 - 800648763.2
duf47 domain-containing proteinATSB10_RS00050Not Available+8143 - 877223271.1
inorganic phosphate transporterATSB10_RS00055O34436+8821 - 994539021.6

Displaying genes 1 – 10 of 3849 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

210 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000047sophoroseC12H22O11Chemical structure of sophoroseNot available
Average342.297Da
Monoisotopic342.116211528Da
BASm0000234(3R)-hydroxybutanoate dimerC8H13O5Chemical structure of (3R)-hydroxybutanoate dimerNot available
Average189.188Da
Monoisotopic189.0768471Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da

Displaying 1–10 of 210 metabolites