Variovorax sp. PAMC 28711 strain PAMC28711

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. PAMC 28711 is a rod-shaped bacterium that is notable for its single replicon. This strain is cataloged under the accession number NZ_CP014517.1, which provides a reference for further genomic studies and potential applications in microbiology. The genus Variovorax is known for its versatile metabolic capabilities, often including the ability to degrade various organic compounds. While specific metabolic traits of PAMC 28711 are not provided, members of this genus typically play important roles in bioremediation processes, utilizing pollutants as carbon sources. The presence of a single replicon can indicate a streamlined genomic organization, which may facilitate efficient replication and adaptation to environmental changes. This trait could be advantageous in various ecological niches, allowing Variovorax sp. PAMC 28711 to thrive in diverse conditions. Overall, the characteristics of Variovorax sp. PAMC 28711 suggest it may be well-suited for applications in environmental microbiology, particularly in the context of bioremediation. Further research into its specific metabolic capabilities and ecological interactions could provide valuable insights into its role in nutrient cycling and pollutant degradation in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PAMC 28711
Strainstrain PAMC28711

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. PAMC 28711 strain PAMC28711 chromosome, complete

Gene Summary

Adenine Count

732838 bp

Thymine Count

735799 bp

Guanine Count

1423765 bp

Cytosine Count

1423750 bp

Genome Length

4316152 bp

Protein-coding Genes

4145 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sirohydrochlorin chelataseAX767_RS19415Not AvailableNegative4027785 - 402815012898.8
lps export abc transporter permease lptgAX767_RS19420Not AvailableNegative4028160 - 402926941285.7
lps export abc transporter permease lptfAX767_RS19425Not AvailableNegative4029266 - 403038441220.5
leucyl aminopeptidaseAX767_RS19430Not AvailablePositive4030406 - 403189650659.1
dna polymerase iii subunit chiAX767_RS19435Not AvailablePositive4031893 - 403233015903.1
hypothetical proteinAX767_RS19440Not AvailablePositive4032330 - 403274014825.7
branched-chain amino acid abc transporter substrate-binding proteinAX767_RS19445Not AvailablePositive4032869 - 403407441618.9
Trna-serNot AvailableNot AvailablePositive4034191 - 4034280Not Available
spfh domain-containing proteinAX767_RS19455Not AvailableNegative4034294 - 403522633631.6
nfed family proteinAX767_RS19460Not AvailableNegative4035253 - 403567814881.0

Displaying genes 3961 – 3970 of 4242 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.