Variovorax sp. PAMC 28711 strain PAMC28711

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. PAMC 28711 is a rod-shaped bacterium that is notable for its single replicon. This strain is cataloged under the accession number NZ_CP014517.1, which provides a reference for further genomic studies and potential applications in microbiology. The genus Variovorax is known for its versatile metabolic capabilities, often including the ability to degrade various organic compounds. While specific metabolic traits of PAMC 28711 are not provided, members of this genus typically play important roles in bioremediation processes, utilizing pollutants as carbon sources. The presence of a single replicon can indicate a streamlined genomic organization, which may facilitate efficient replication and adaptation to environmental changes. This trait could be advantageous in various ecological niches, allowing Variovorax sp. PAMC 28711 to thrive in diverse conditions. Overall, the characteristics of Variovorax sp. PAMC 28711 suggest it may be well-suited for applications in environmental microbiology, particularly in the context of bioremediation. Further research into its specific metabolic capabilities and ecological interactions could provide valuable insights into its role in nutrient cycling and pollutant degradation in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PAMC 28711
Strainstrain PAMC28711

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. PAMC 28711 strain PAMC28711 chromosome, complete

Gene Summary

Adenine Count

732838 bp

Thymine Count

735799 bp

Guanine Count

1423765 bp

Cytosine Count

1423750 bp

Genome Length

4316152 bp

Protein-coding Genes

4145 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tol-pal system beta propeller repeat protein tolbAX767_RS19320Not AvailablePositive4005890 - 400714344531.4
peptidoglycan-associated lipoprotein palAX767_RS19325Not AvailablePositive4007163 - 400767518027.3
tol-pal system protein ybgfAX767_RS19330Not AvailablePositive4007678 - 400842727551.5
thif family adenylyltransferaseAX767_RS19335Not AvailablePositive4008439 - 400925728784.4
Trna-lysNot AvailableNot AvailablePositive4009289 - 4009364Not Available
eal and hdod domain-containing proteinAX767_RS19345Not AvailableNegative4009490 - 401073444523.0
gaf domain-containing proteinAX767_RS19350Not AvailableNegative4010783 - 401149326290.0
hypothetical proteinAX767_RS19355Not AvailableNegative4011624 - 40118488023.41
hypothetical proteinAX767_RS19360Not AvailableNegative4012022 - 401260320518.5
abc-f family atp-binding cassette domain-containing proteinAX767_RS19365Not AvailableNegative4012619 - 401459271487.5

Displaying genes 3941 – 3950 of 4242 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.