Variovorax sp. PAMC 28711 strain PAMC28711

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. PAMC 28711 is a rod-shaped bacterium that is notable for its single replicon. This strain is cataloged under the accession number NZ_CP014517.1, which provides a reference for further genomic studies and potential applications in microbiology. The genus Variovorax is known for its versatile metabolic capabilities, often including the ability to degrade various organic compounds. While specific metabolic traits of PAMC 28711 are not provided, members of this genus typically play important roles in bioremediation processes, utilizing pollutants as carbon sources. The presence of a single replicon can indicate a streamlined genomic organization, which may facilitate efficient replication and adaptation to environmental changes. This trait could be advantageous in various ecological niches, allowing Variovorax sp. PAMC 28711 to thrive in diverse conditions. Overall, the characteristics of Variovorax sp. PAMC 28711 suggest it may be well-suited for applications in environmental microbiology, particularly in the context of bioremediation. Further research into its specific metabolic capabilities and ecological interactions could provide valuable insights into its role in nutrient cycling and pollutant degradation in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PAMC 28711
Strainstrain PAMC28711

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. PAMC 28711 strain PAMC28711 chromosome, complete

Gene Summary

Adenine Count

732838 bp

Thymine Count

735799 bp

Guanine Count

1423765 bp

Cytosine Count

1423750 bp

Genome Length

4316152 bp

Protein-coding Genes

4145 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dotu family type iv/vi secretion system proteinAX767_RS12665Not AvailableNegative2603824 - 260517349050.2
response regulatorAX767_RS12670Not AvailablePositive2605295 - 260596623738.2
phosphoglycolate phosphataseAX767_RS12675Not AvailablePositive2606000 - 260668624149.1
anthranilate synthase component iAX767_RS12680Not AvailablePositive2606951 - 260845355000.4
gxxexxy proteinAX767_RS12685Not AvailablePositive2608450 - 260883914203.3
anthranilate synthase component iiAX767_RS12690Not AvailablePositive2608836 - 260942020971.2
low-specificity l-threonine aldolaseAX767_RS12695Not AvailablePositive2609425 - 261046836324.3
anthranilate phosphoribosyltransferaseAX767_RS12700Not AvailablePositive2610488 - 261151936420.3
indole-3-glycerol phosphate synthase trpcAX767_RS12705Not AvailablePositive2611522 - 261232228798.7
uracil-dna glycosylaseAX767_RS12710Not AvailablePositive2612319 - 261303825813.1

Displaying genes 2591 – 2600 of 4242 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.