Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PAMC 28711 |
| Strain | strain PAMC28711 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
732838 bp
Thymine Count
735799 bp
Guanine Count
1423765 bp
Cytosine Count
1423750 bp
Genome Length
4316152 bp
Protein-coding Genes
4145 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system-associated fha domain protein tagh | AX767_RS12615 | Not Available | Positive | 2594995 - 2596584 | 54593.3 |
| pp2c family protein-serine/threonine phosphatase | AX767_RS12620 | Not Available | Positive | 2596609 - 2597397 | 27593.6 |
| hypothetical protein | AX767_RS12625 | Not Available | Negative | 2597437 - 2597949 | 19478.3 |
| hypothetical protein | AX767_RS12630 | Not Available | Negative | 2597963 - 2598475 | 18975.6 |
| hcp family type vi secretion system effector | AX767_RS12635 | Not Available | Negative | 2598557 - 2599036 | 17251.0 |
| type vi secretion system contractile sheath large subunit | AX767_RS12640 | Not Available | Negative | 2599196 - 2600689 | 55213.0 |
| type vi secretion system contractile sheath small subunit | AX767_RS12645 | Not Available | Negative | 2600722 - 2601237 | 18534.2 |
| type vi secretion system protein tssa | AX767_RS12650 | Not Available | Negative | 2601278 - 2602312 | 36360.0 |
| type vi secretion system lipoprotein tssj | AX767_RS12655 | Not Available | Positive | 2602384 - 2602866 | 17531.6 |
| type vi secretion system protein | AX767_RS12660 | Not Available | Negative | 2602817 - 2603827 | 36831.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
