Variovorax sp. PAMC 28711 strain PAMC28711

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. PAMC 28711 is a rod-shaped bacterium that is notable for its single replicon. This strain is cataloged under the accession number NZ_CP014517.1, which provides a reference for further genomic studies and potential applications in microbiology. The genus Variovorax is known for its versatile metabolic capabilities, often including the ability to degrade various organic compounds. While specific metabolic traits of PAMC 28711 are not provided, members of this genus typically play important roles in bioremediation processes, utilizing pollutants as carbon sources. The presence of a single replicon can indicate a streamlined genomic organization, which may facilitate efficient replication and adaptation to environmental changes. This trait could be advantageous in various ecological niches, allowing Variovorax sp. PAMC 28711 to thrive in diverse conditions. Overall, the characteristics of Variovorax sp. PAMC 28711 suggest it may be well-suited for applications in environmental microbiology, particularly in the context of bioremediation. Further research into its specific metabolic capabilities and ecological interactions could provide valuable insights into its role in nutrient cycling and pollutant degradation in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PAMC 28711
Strainstrain PAMC28711

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. PAMC 28711 strain PAMC28711 chromosome, complete

Gene Summary

Adenine Count

732838 bp

Thymine Count

735799 bp

Guanine Count

1423765 bp

Cytosine Count

1423750 bp

Genome Length

4316152 bp

Protein-coding Genes

4145 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phosphate/phosphite/phosphonate abc transporter substrate-binding proteinAX767_RS12515Not AvailablePositive2569170 - 257015936059.3
type vi secretion system baseplate subunit tsskAX767_RS12520Not AvailablePositive2570303 - 257163449171.4
dotu family type vi secretion system proteinAX767_RS12525Not AvailablePositive2571631 - 257296847381.0
type vi secretion system membrane subunit tssmAX767_RS12530Not AvailablePositive2572965 - 2576564132237.0
type vi secretion system-associated protein tagfAX767_RS12535Not AvailablePositive2576564 - 257717522134.2
serine/threonine-protein kinaseAX767_RS12540Not AvailablePositive2577172 - 257895362419.8
murein transglycosylase aAX767_RS12545Not AvailablePositive2578979 - 258054454711.0
type vi secretion system tube protein hcpAX767_RS12550Not AvailablePositive2580595 - 258114919385.0
type vi secretion system accessory protein tagjAX767_RS12555Not AvailablePositive2581190 - 258201130065.8
type vi secretion system baseplate subunit tsseAX767_RS12560Not AvailablePositive2582004 - 258252219490.4

Displaying genes 2561 – 2570 of 4242 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.