Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. PAMC 28711 |
| Strain | strain PAMC28711 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
732838 bp
Thymine Count
735799 bp
Guanine Count
1423765 bp
Cytosine Count
1423750 bp
Genome Length
4316152 bp
Protein-coding Genes
4145 genes
Non-Coding Genes
97 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphate/phosphite/phosphonate abc transporter substrate-binding protein | AX767_RS12515 | Not Available | Positive | 2569170 - 2570159 | 36059.3 |
| type vi secretion system baseplate subunit tssk | AX767_RS12520 | Not Available | Positive | 2570303 - 2571634 | 49171.4 |
| dotu family type vi secretion system protein | AX767_RS12525 | Not Available | Positive | 2571631 - 2572968 | 47381.0 |
| type vi secretion system membrane subunit tssm | AX767_RS12530 | Not Available | Positive | 2572965 - 2576564 | 132237.0 |
| type vi secretion system-associated protein tagf | AX767_RS12535 | Not Available | Positive | 2576564 - 2577175 | 22134.2 |
| serine/threonine-protein kinase | AX767_RS12540 | Not Available | Positive | 2577172 - 2578953 | 62419.8 |
| murein transglycosylase a | AX767_RS12545 | Not Available | Positive | 2578979 - 2580544 | 54711.0 |
| type vi secretion system tube protein hcp | AX767_RS12550 | Not Available | Positive | 2580595 - 2581149 | 19385.0 |
| type vi secretion system accessory protein tagj | AX767_RS12555 | Not Available | Positive | 2581190 - 2582011 | 30065.8 |
| type vi secretion system baseplate subunit tsse | AX767_RS12560 | Not Available | Positive | 2582004 - 2582522 | 19490.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
