Variovorax sp. PAMC 28711 strain PAMC28711

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. PAMC 28711 is a rod-shaped bacterium that is notable for its single replicon. This strain is cataloged under the accession number NZ_CP014517.1, which provides a reference for further genomic studies and potential applications in microbiology. The genus Variovorax is known for its versatile metabolic capabilities, often including the ability to degrade various organic compounds. While specific metabolic traits of PAMC 28711 are not provided, members of this genus typically play important roles in bioremediation processes, utilizing pollutants as carbon sources. The presence of a single replicon can indicate a streamlined genomic organization, which may facilitate efficient replication and adaptation to environmental changes. This trait could be advantageous in various ecological niches, allowing Variovorax sp. PAMC 28711 to thrive in diverse conditions. Overall, the characteristics of Variovorax sp. PAMC 28711 suggest it may be well-suited for applications in environmental microbiology, particularly in the context of bioremediation. Further research into its specific metabolic capabilities and ecological interactions could provide valuable insights into its role in nutrient cycling and pollutant degradation in various ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. PAMC 28711
Strainstrain PAMC28711

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. PAMC 28711 strain PAMC28711 chromosome, complete

Gene Summary

Adenine Count

732838 bp

Thymine Count

735799 bp

Guanine Count

1423765 bp

Cytosine Count

1423750 bp

Genome Length

4316152 bp

Protein-coding Genes

4145 genes

Non-Coding Genes

97 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fad-linked oxidase c-terminal domain-containing proteinAX767_RS08340Not AvailablePositive1668380 - 166988553468.3
cida/lrga family proteinAX767_RS08345Not AvailablePositive1669885 - 167023512561.1
lrgb family proteinAX767_RS08350Not AvailablePositive1670235 - 167096024904.1
yxwgxw repeat-containing proteinAX767_RS08355Not AvailableNegative1670965 - 167137215507.2
gdsl-type esterase/lipase family proteinAX767_RS08360Not AvailableNegative1671489 - 167272143038.4
carboxyl transferase domain-containing proteinAX767_RS08365Not AvailableNegative1672797 - 1676099115728.0
amp-binding proteinAX767_RS08370Not AvailableNegative1676101 - 167772058466.4
tetr/acrr family transcriptional regulatorAX767_RS08375Not AvailablePositive1677795 - 167846025153.0
bifunctional cytochrome p450/nadph--p450 reductaseAX767_RS08380Not AvailablePositive1678557 - 1681784118569.0
manganese efflux pump mntpAX767_RS08385Not AvailableNegative1681789 - 168235519537.3

Displaying genes 1711 – 1720 of 4242 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.