Pseudomonas putida strain 1A00316

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain 1A00316 is a Gram-negative, rod-shaped bacterium that thrives in soil and wastewater environments. This strain is a heterotrophic organism, obtaining its energy from organic compounds present in its habitat. It exhibits a facultative oxygen requirement, allowing it to adapt to varying levels of oxygen availability. P. putida 1A00316 features single-cell arrangements and possesses mobility due to the presence of flagella. This strain operates under mesophilic temperature conditions, indicating an optimal growth range typically between 20°C and 45°C. It has a single replicon and two membranes, characteristic of Gram-negative bacteria. Notably, P. putida 1A00316 is free-living, which means it does not rely on a host for survival. However, it has been associated with a variety of hosts, including several plant species such as Triticum aestivum (wheat), Solanum lycopersicum (tomato), and Oryza sativa (rice), as well as some animal species and various algae. Pseudomonas putida has been implicated in nosocomial infections, highlighting its potential pathogenicity in animals. Despite this, its ecological role as a free-living organism suggests that it may contribute to nutrient cycling and soil health, particularly in environments where organic waste is present. This duality of being both a potential pathogen and an important ecological player underscores the complexity of microbial interactions within ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain 1A00316

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida strain 1A00316
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Homo sapiens, Viridiplantae, Triticum aestivum
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain 1A00316 chromosome, complete genome.

Gene Summary

Adenine Count

1012525 bp

Thymine Count

1020081 bp

Guanine Count

1843859 bp

Cytosine Count

1839350 bp

Genome Length

5715815 bp

Protein-coding Genes

5063 genes

Non-Coding Genes

130 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
oxygen-dependent coproporphyrinogen oxidaseAWT69_RS00140Q1I2G6Positive30653 - 3156434464.3
shikimate dehydrogenaseAWT69_RS00145A4XNB9Positive31590 - 3241429286.0
sulp family inorganic anion transporterAWT69_RS00150Q80ZD3Negative32454 - 3401955798.5
choline abc transporter substrate-binding proteinAWT69_RS00155Q9L4K3Negative34169 - 3509233350.9
choline-sulfataseAWT69_RS00160O69787Negative35107 - 3662457352.2
choline sulfate utilization transcriptional regulatorAWT69_RS00165P14145Positive36734 - 3763033295.0
dopa 4,5-dioxygenase family proteinAWT69_RS00170Not AvailablePositive37682 - 3801412482.1
tryptophan synthase subunit alphaAWT69_RS00175Q1IH21Negative38088 - 3889728381.0
tryptophan synthase subunit betaAWT69_RS00180Q1IH20Negative38894 - 4011143983.7
lysr family transcriptional regulatorAWT69_RS00185P34818Positive40222 - 4111832494.9

Displaying genes 71 – 80 of 5193 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

301 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 301 metabolites

Health Effects

Health ConditionRelationReference
Nosocomial infectionsCausesPMC11585281
Nosocomial infectionsCausesPMC13243026

Displaying health effects 1 – 2 of 2 in total