Pseudomonas putida strain 1A00316

Gram-negativeRodMotileFacultative

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas putida strain 1A00316 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is nonsporulating. This strain is classified as a heterotroph, relying on organic compounds for energy, which aligns with its common habitats in soil and wastewater environments. The facultative nature of its oxygen requirement suggests that P. putida strain 1A00316 can metabolize in both aerobic and anaerobic conditions, providing it with a versatile adaptability to varying ecological niches. Pseudomonas putida strains are known for their potential in bioremediation processes due to their ability to degrade a wide range of environmental pollutants. The capacity of this strain to thrive in wastewater indicates that it may play a significant role in the microbial community involved in the treatment of contaminated water, helping to break down organic substances and contributing to nutrient cycling. Additionally, its presence in soil ecosystems further underscores its ecological importance, as it may participate in interactions with other microbial species and contribute to soil health and fertility. Overall, Pseudomonas putida strain 1A00316 exemplifies the adaptive features of soil-dwelling bacteria that facilitate their survival and functional roles in diverse environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas putida
Strainstrain 1A00316

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Pseudomonas putida strain 1A00316
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatSoil - Wastewater
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNonsporulating
Energy sourceHeterotroph
PathogenicityAnimal

Genome Summary

Pseudomonas putida strain 1A00316


Gene Summary

Adenine Count

1012525 bp

Thymine Count

1020081 bp

Guanine Count

1843859 bp

Cytosine Count

1839350 bp

Genome Length

5715815 bp

Protein-coding Genes

5063 genes

Non-Coding Genes

130 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+3706433 - 3706444Not Available
Error-prone lesion bypass dna polymerase vAWT69_RS16580P22494-3720867 - 372213847303.3
Protein umudAWT69_RS16585P22493-3722128 - 372255615541.6
Sos response associated peptidaseAWT69_RS16590Not Available+3722664 - 372296311489.8
lysis system i-spanin subunit rzAWT69_RS16595Not Available-3724197 - 372474219763.4
Glycoside hydrolase family 19 proteinAWT69_RS26600Not Available-3724742 - 37248915471.39
Tail proteinAWT69_RS26605Not Available-3724892 - 37250927373.72
Putative phage tail proteinAWT69_RS16605Not Available-3725067 - 372544714034.7
hypothetical proteinAWT69_RS16610Not Available-3725709 - 372619317327.7
duf5906 domain-containing proteinAWT69_RS16615Not Available-3726602 - 372818755933.2

Displaying genes 1 – 10 of 5193 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

301 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000232(4S)-perillyl alcoholC10H16OChemical structure of (4S)-perillyl alcoholNot available
Average152.237Da
Monoisotopic152.1201151Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm00002593alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,12alpha-dihydroxy-7-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000305tetrathionateO6S4Chemical structure of tetrathionateNot available
Average224.24Da
Monoisotopic223.8588696Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 301 metabolites