Stenotrophomonas sp. KCTC 12332 strain YM1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas sp. KCTC 12332 strain YM1 is characterized as a rod-shaped bacterium. This strain possesses flagella, which indicates its ability to move in its environment. It contains a single replicon, essential for its genetic stability and replication. The strain is cataloged under the accession NZ_CP014274.1, which allows for its identification and further study within microbial databases. Accessions are crucial for tracking genomic information and understanding the genetic landscape of Stenotrophomonas sp. KCTC 12332. Stenotrophomonas species are known for their versatility and adaptability in various environments, often found in soil and water. Their flagella contribute to motility, potentially aiding in colonization and survival in diverse ecological niches. This strain's rod shape is typical of many bacteria, allowing for efficient nutrient uptake and interaction with its surroundings. In summary, Stenotrophomonas sp. KCTC 12332 strain YM1 exhibits significant traits, such as its rod shape, flagella presence, and a single replicon, which may enhance its ecological adaptability. Understanding these characteristics can provide insights into its role within microbial communities and its potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas sp. KCTC 12332
Strainstrain YM1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas sp. KCTC 12332 strain YM1 chromosome, complete

Gene Summary

Adenine Count

838014 bp

Thymine Count

804558 bp

Guanine Count

1399961 bp

Cytosine Count

1499061 bp

Genome Length

4541594 bp

Protein-coding Genes

3860 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dipeptide epimeraseAXG53_RS16265Not AvailablePositive3780066 - 378116338808.3
murr/rpir family transcriptional regulatorAXG53_RS16275Not AvailablePositive3782236 - 378308430985.1
l,d-transpeptidaseAXG53_RS16280Not AvailablePositive3783102 - 378388428212.6
dicarboxylate/amino acid:cation symporterAXG53_RS16285Not AvailablePositive3783937 - 378522945139.0
inner membrane protein yiaaAXG53_RS16290Not AvailableNegative3785273 - 378570715721.5
pqq-dependent sugar dehydrogenaseAXG53_RS16295Not AvailablePositive3785872 - 378702641340.7
hypothetical proteinAXG53_RS16300Not AvailableNegative3787197 - 378769417811.4
glycoside hydrolase family 3 n-terminal domain-containing proteinAXG53_RS16305Not AvailableNegative3787960 - 379013478290.9
mechanosensitive ion channel family proteinAXG53_RS16310Not AvailableNegative3790398 - 379166046817.3
dihydroneopterin aldolaseAXG53_RS16315Not AvailableNegative3791784 - 379214313503.4

Displaying genes 3321 – 3330 of 3954 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.