Stenotrophomonas sp. KCTC 12332 strain YM1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas sp. KCTC 12332 strain YM1 is characterized as a rod-shaped bacterium. This strain possesses flagella, which indicates its ability to move in its environment. It contains a single replicon, essential for its genetic stability and replication. The strain is cataloged under the accession NZ_CP014274.1, which allows for its identification and further study within microbial databases. Accessions are crucial for tracking genomic information and understanding the genetic landscape of Stenotrophomonas sp. KCTC 12332. Stenotrophomonas species are known for their versatility and adaptability in various environments, often found in soil and water. Their flagella contribute to motility, potentially aiding in colonization and survival in diverse ecological niches. This strain's rod shape is typical of many bacteria, allowing for efficient nutrient uptake and interaction with its surroundings. In summary, Stenotrophomonas sp. KCTC 12332 strain YM1 exhibits significant traits, such as its rod shape, flagella presence, and a single replicon, which may enhance its ecological adaptability. Understanding these characteristics can provide insights into its role within microbial communities and its potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas sp. KCTC 12332
Strainstrain YM1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas sp. KCTC 12332 strain YM1 chromosome, complete

Gene Summary

Adenine Count

838014 bp

Thymine Count

804558 bp

Guanine Count

1399961 bp

Cytosine Count

1499061 bp

Genome Length

4541594 bp

Protein-coding Genes

3860 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
zinc ribbon domain-containing protein yjdmAXG53_RS11275Not AvailableNegative2658485 - 265881711789.1
cation diffusion facilitator family transporterAXG53_RS11280Not AvailablePositive2658930 - 265991935099.5
hsp70 family proteinAXG53_RS11285Not AvailablePositive2659983 - 266136249369.2
duf4097 family beta strand repeat-containing proteinAXG53_RS11290Not AvailableNegative2661548 - 266243830269.7
hypothetical proteinAXG53_RS11295Not AvailableNegative2662450 - 266299819861.8
rna polymerase sigma factorAXG53_RS11300Not AvailableNegative2662995 - 266356721122.5
ectonucleotide pyrophosphatase/phosphodiesteraseAXG53_RS11305Not AvailablePositive2663705 - 266497046108.8
mechanosensitive ion channel family proteinAXG53_RS11310Not AvailablePositive2664991 - 266557221348.4
sugar transporterAXG53_RS11315Not AvailablePositive2665886 - 266704040785.4
gnat family n-acetyltransferaseAXG53_RS11320Not AvailablePositive2667149 - 266764918292.0

Displaying genes 2311 – 2320 of 3954 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.