Stenotrophomonas sp. KCTC 12332 strain YM1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Stenotrophomonas

Description

Stenotrophomonas sp. KCTC 12332 strain YM1 is characterized as a rod-shaped bacterium. This strain possesses flagella, which indicates its ability to move in its environment. It contains a single replicon, essential for its genetic stability and replication. The strain is cataloged under the accession NZ_CP014274.1, which allows for its identification and further study within microbial databases. Accessions are crucial for tracking genomic information and understanding the genetic landscape of Stenotrophomonas sp. KCTC 12332. Stenotrophomonas species are known for their versatility and adaptability in various environments, often found in soil and water. Their flagella contribute to motility, potentially aiding in colonization and survival in diverse ecological niches. This strain's rod shape is typical of many bacteria, allowing for efficient nutrient uptake and interaction with its surroundings. In summary, Stenotrophomonas sp. KCTC 12332 strain YM1 exhibits significant traits, such as its rod shape, flagella presence, and a single replicon, which may enhance its ecological adaptability. Understanding these characteristics can provide insights into its role within microbial communities and its potential applications in biotechnology or environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusStenotrophomonas
SpeciesStenotrophomonas sp. KCTC 12332
Strainstrain YM1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Stenotrophomonas sp. KCTC 12332 strain YM1 chromosome, complete

Gene Summary

Adenine Count

838014 bp

Thymine Count

804558 bp

Guanine Count

1399961 bp

Cytosine Count

1499061 bp

Genome Length

4541594 bp

Protein-coding Genes

3860 genes

Non-Coding Genes

94 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
bifunctional (p)ppgpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolaseAXG53_RS05275Not AvailableNegative1235874 - 123803380279.8
dna-directed rna polymerase subunit omegaAXG53_RS05280Not AvailableNegative1238140 - 123843911249.1
guanylate kinaseAXG53_RS05285Not AvailableNegative1238552 - 123918423183.5
yicc/yloc family endoribonucleaseAXG53_RS05290Not AvailableNegative1239556 - 124041632097.6
ribonuclease phAXG53_RS05295Not AvailablePositive1240526 - 124125426164.1
voc family proteinAXG53_RS05300Not AvailablePositive1241251 - 124164014531.1
rdgb/ham1 family non-canonical purine ntp pyrophosphataseAXG53_RS05305Not AvailablePositive1241637 - 124223621449.8
hypothetical proteinAXG53_RS05310Not AvailablePositive1242253 - 124275318308.6
radical sam family heme chaperone hemwAXG53_RS05315Not AvailablePositive1242789 - 124401845943.0
duf1631 domain-containing proteinAXG53_RS05320Not AvailablePositive1244088 - 124656888698.1

Displaying genes 1081 – 1090 of 3954 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.