Agrobacterium tumefaciens strain S33

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Agrobacterium

Description

Agrobacterium tumefaciens strain S33 is a Gram-negative, rod-shaped bacterium that exhibits motility and possesses flagella. It is categorized as an aerobe, requiring oxygen for growth, and thrives optimally at a temperature of 25°C, fitting within a mesophilic temperature range. This strain has two replicons and two membranes, a characteristic typical of many Gram-negative bacteria. Strain S33 is free-living and has a wide range of hosts, primarily within the Viridiplantae kingdom. Notable hosts include Triticum aestivum (wheat), Solanum tuberosum (potato), Solanum lycopersicum (tomato), Oryza sativa (rice), Arabidopsis, and Glycine max (soybean), among others. This diverse host range highlights its ecological versatility and potential impacts on agricultural systems. A significant health effect associated with Agrobacterium tumefaciens strain S33 is its role in causing tumors in plants, specifically leading to crown gall disease. The bacterium induces crown gall tumors, resulting in the formation of abnormal growths in afflicted plants. These galls can negatively impact plant health and yield, making the understanding of this strain crucial for managing agricultural diseases. In summary, Agrobacterium tumefaciens strain S33 is an influential bacterium in plant pathology, particularly due to its ability to induce crown gall disease in a variety of economically important crops. This underscores the importance of monitoring and managing its presence in agricultural settings to mitigate adverse effects on plant health.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusAgrobacterium
SpeciesAgrobacterium tumefaciens
Strainstrain S33

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Agrobacterium tumefaciens strain S33
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature25
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Viridiplantae, Triticum aestivum, Solanum tuberosum
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Agrobacterium tumefaciens strain S33 chromosome circular, complete

Gene Summary

Adenine Count

512858 bp

Thymine Count

510392 bp

Guanine Count

737402 bp

Cytosine Count

737282 bp

Genome Length

2497934 bp

Protein-coding Genes

2254 genes

Non-Coding Genes

21 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dutp diphosphataseAWN88_RS21120Not AvailableNegative2051494 - 205196416306.7
peptide chain release factor 3AWN88_RS21125Not AvailablePositive2052055 - 205363858924.8
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase coabcAWN88_RS21130Not AvailablePositive2053809 - 205501442414.4
mmcq/yjbr family dna-binding proteinAWN88_RS21135Not AvailablePositive2055011 - 205538514233.1
sterol desaturase family proteinAWN88_RS21140Not AvailableNegative2055394 - 205630834091.6
2-polyprenylphenol 6-hydroxylaseAWN88_RS21145Not AvailableNegative2056469 - 205804358287.1
bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubieAWN88_RS21150Not AvailableNegative2058080 - 205885628753.4
bifunctional dna-formamidopyrimidine glycosylase/dna-(apurinic or apyrimidinic site) lyaseAWN88_RS21155Not AvailablePositive2059000 - 205989632697.2
enoyl-coa hydrataseAWN88_RS21160Not AvailablePositive2059924 - 206069727557.4
30s ribosomal protein s20AWN88_RS21165Not AvailablePositive2060893 - 20611599452.56

Displaying genes 4341 – 4350 of 5199 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
TumorsCausesPMC177831
Crown gall diseaseCausesPMC2241609
Crown gall diseaseCausesPMC2653234
Crown gall diseaseCausesPMC11575935
Crown and cane gall symptomsCausesPMC12602688
Crown and cane gallsCausesPMC12602688
Crown gall diseaseCausesPMC9343901
Crown gallCausesPMC12030312
Crown-gall diseaseCausesPMC7248198
Crown gall tumorsCausesPMC8087989

Displaying health effects 1 – 10 of 11 in total