Sphingomonas panacis strain DCY99

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas panacis strain DCY99 is a rod-shaped bacterium known for its distinct structural and genetic characteristics. This strain possesses flagella, which suggests motility, allowing it to navigate its environment effectively. The presence of two replicons indicates a complex genomic structure that may contribute to its adaptability and survival in various ecological niches. The strain is cataloged under the accessions NZ_CP014168.1 and NZ_CP014169.1, which provide essential genetic information that can be used for further research and characterization. These accessions may contain data on the genome sequence, aiding in understanding the metabolic pathways and potential applications of Sphingomonas panacis in biotechnology or environmental remediation. The ecological significance of Sphingomonas panacis strain DCY99 may stem from its ability to thrive in diverse environments, which is facilitated by its motility and genomic adaptability. Rod-shaped bacteria often play vital roles in nutrient cycling and can participate in the degradation of complex organic compounds in their habitats. Therefore, Sphingomonas panacis strain DCY99 could be an important player in microbial communities, contributing to ecological processes and possibly influencing the dynamics of its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas panacis
Strainstrain DCY99

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas panacis strain DCY99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas panacis strain DCY99 plasmid unnamed, complete

Gene Summary

Adenine Count

57806 bp

Thymine Count

61203 bp

Guanine Count

103308 bp

Cytosine Count

96816 bp

Genome Length

319133 bp

Protein-coding Genes

295 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lytic transglycosylase domain-containing proteinJ0A91_RS16825Not AvailablePositive3714482 - 371618561036.6
molybdenum cofactor biosynthesis protein bJ0A91_RS16830Not AvailablePositive3716175 - 371670219079.0
Trna-hisNot AvailableNot AvailablePositive3716734 - 3716810Not Available
type ii secretion system protein nJ0A91_RS16840Not AvailableNegative3716860 - 371758524624.9
type ii secretion system protein gspmJ0A91_RS16845Not AvailableNegative3717582 - 371805816643.4
type ii secretion system protein gsplJ0A91_RS16850Not AvailableNegative3718055 - 371914937315.0
type ii secretion system minor pseudopilin gspkJ0A91_RS16855Not AvailableNegative3719146 - 372013234036.6
type ii secretion system minor pseudopilin gspjJ0A91_RS16860Not AvailableNegative3720125 - 372082624869.8
type ii secretion system minor pseudopilin gspiJ0A91_RS16865Not AvailableNegative3720823 - 372120012940.7
gsph/fimt family pseudopilinJ0A91_RS16870Not AvailableNegative3721193 - 372170218083.6

Displaying genes 3711 – 3720 of 4958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.