Sphingomonas panacis strain DCY99

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas panacis strain DCY99 is a rod-shaped bacterium known for its distinct structural and genetic characteristics. This strain possesses flagella, which suggests motility, allowing it to navigate its environment effectively. The presence of two replicons indicates a complex genomic structure that may contribute to its adaptability and survival in various ecological niches. The strain is cataloged under the accessions NZ_CP014168.1 and NZ_CP014169.1, which provide essential genetic information that can be used for further research and characterization. These accessions may contain data on the genome sequence, aiding in understanding the metabolic pathways and potential applications of Sphingomonas panacis in biotechnology or environmental remediation. The ecological significance of Sphingomonas panacis strain DCY99 may stem from its ability to thrive in diverse environments, which is facilitated by its motility and genomic adaptability. Rod-shaped bacteria often play vital roles in nutrient cycling and can participate in the degradation of complex organic compounds in their habitats. Therefore, Sphingomonas panacis strain DCY99 could be an important player in microbial communities, contributing to ecological processes and possibly influencing the dynamics of its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas panacis
Strainstrain DCY99

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas panacis strain DCY99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas panacis strain DCY99 plasmid unnamed, complete

Gene Summary

Adenine Count

57806 bp

Thymine Count

61203 bp

Guanine Count

103308 bp

Cytosine Count

96816 bp

Genome Length

319133 bp

Protein-coding Genes

295 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
yqge/algh family proteinJ0A91_RS13555Not AvailablePositive2958468 - 295902819672.3
holliday junction resolvase ruvxJ0A91_RS13560Not AvailableNegative2959039 - 295950016694.2
duf3089 domain-containing proteinJ0A91_RS13565Not AvailableNegative2959622 - 296071938737.6
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatcJ0A91_RS13570Not AvailablePositive2960837 - 296112410262.3
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gataJ0A91_RS13575Not AvailablePositive2961240 - 296272451414.2
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatbJ0A91_RS13580Not AvailablePositive2962885 - 296436053366.2
peptidylprolyl isomeraseJ0A91_RS13585Not AvailablePositive2964357 - 296498621896.4
ampg family muropeptide mfs transporterJ0A91_RS13590Not AvailablePositive2965054 - 296673659699.1
hypothetical proteinJ0A91_RS13595Not AvailablePositive2966740 - 29668835509.86
duf6628 family proteinJ0A91_RS13600Not AvailableNegative2966928 - 296735614938.5

Displaying genes 3051 – 3060 of 4958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.