Sphingomonas panacis strain DCY99

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas panacis strain DCY99 is a rod-shaped bacterium known for its distinct structural and genetic characteristics. This strain possesses flagella, which suggests motility, allowing it to navigate its environment effectively. The presence of two replicons indicates a complex genomic structure that may contribute to its adaptability and survival in various ecological niches. The strain is cataloged under the accessions NZ_CP014168.1 and NZ_CP014169.1, which provide essential genetic information that can be used for further research and characterization. These accessions may contain data on the genome sequence, aiding in understanding the metabolic pathways and potential applications of Sphingomonas panacis in biotechnology or environmental remediation. The ecological significance of Sphingomonas panacis strain DCY99 may stem from its ability to thrive in diverse environments, which is facilitated by its motility and genomic adaptability. Rod-shaped bacteria often play vital roles in nutrient cycling and can participate in the degradation of complex organic compounds in their habitats. Therefore, Sphingomonas panacis strain DCY99 could be an important player in microbial communities, contributing to ecological processes and possibly influencing the dynamics of its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas panacis
Strainstrain DCY99

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas panacis strain DCY99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas panacis strain DCY99 plasmid unnamed, complete

Gene Summary

Adenine Count

57806 bp

Thymine Count

61203 bp

Guanine Count

103308 bp

Cytosine Count

96816 bp

Genome Length

319133 bp

Protein-coding Genes

295 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramoyl-l-alanyl-d-glutamate--2, 6-diaminopimelate ligaseJ0A91_RS12005Not AvailablePositive2628310 - 262972548609.3
udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligaseJ0A91_RS12010Not AvailablePositive2629847 - 263122046507.4
phospho-n-acetylmuramoyl-pentapeptide- transferaseJ0A91_RS12015Not AvailablePositive2631221 - 263229138337.7
udp-n-acetylmuramoyl-l-alanine--d-glutamate ligaseJ0A91_RS12020Not AvailablePositive2632404 - 263378047316.4
ftsw/roda/spove family cell cycle proteinJ0A91_RS12025Not AvailablePositive2633810 - 263499142399.5
undecaprenyldiphospho-muramoylpentapeptide beta-n-acetylglucosaminyltransferaseJ0A91_RS12030Not AvailablePositive2634988 - 263614841394.2
udp-n-acetylmuramate--l-alanine ligaseJ0A91_RS12035Not AvailablePositive2636145 - 263755149373.1
hypothetical proteinJ0A91_RS12040Not AvailablePositive2637548 - 26377186305.64
udp-n-acetylmuramate dehydrogenaseJ0A91_RS12045Not AvailablePositive2637965 - 263887331813.1
d-alanine--d-alanine ligaseJ0A91_RS12050Not AvailablePositive2638986 - 263992133239.8

Displaying genes 2741 – 2750 of 4958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.