Sphingomonas panacis strain DCY99

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingomonadaceae

Genus

Sphingomonas

Description

Sphingomonas panacis strain DCY99 is a rod-shaped bacterium known for its distinct structural and genetic characteristics. This strain possesses flagella, which suggests motility, allowing it to navigate its environment effectively. The presence of two replicons indicates a complex genomic structure that may contribute to its adaptability and survival in various ecological niches. The strain is cataloged under the accessions NZ_CP014168.1 and NZ_CP014169.1, which provide essential genetic information that can be used for further research and characterization. These accessions may contain data on the genome sequence, aiding in understanding the metabolic pathways and potential applications of Sphingomonas panacis in biotechnology or environmental remediation. The ecological significance of Sphingomonas panacis strain DCY99 may stem from its ability to thrive in diverse environments, which is facilitated by its motility and genomic adaptability. Rod-shaped bacteria often play vital roles in nutrient cycling and can participate in the degradation of complex organic compounds in their habitats. Therefore, Sphingomonas panacis strain DCY99 could be an important player in microbial communities, contributing to ecological processes and possibly influencing the dynamics of its environment.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingomonadaceae
GenusSphingomonas
SpeciesSphingomonas panacis
Strainstrain DCY99

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Sphingomonas panacis strain DCY99
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingomonas panacis strain DCY99 plasmid unnamed, complete

Gene Summary

Adenine Count

57806 bp

Thymine Count

61203 bp

Guanine Count

103308 bp

Cytosine Count

96816 bp

Genome Length

319133 bp

Protein-coding Genes

295 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
glycosyltransferase family 4 proteinJ0A91_RS09900Not AvailablePositive2182421 - 218357240628.3
outer membrane beta-barrel proteinJ0A91_RS09905Not AvailablePositive2183587 - 218481643947.7
udp-glucose/gdp-mannose dehydrogenase family proteinJ0A91_RS09910Not AvailablePositive2184884 - 218618546232.2
sdr family nad(p)-dependent oxidoreductaseJ0A91_RS09915Not AvailablePositive2186182 - 218717135914.8
hypothetical proteinJ0A91_RS09920Not AvailablePositive2187280 - 21874897525.25
laci family dna-binding transcriptional regulatorJ0A91_RS09925Not AvailableNegative2187605 - 218864237870.7
2-keto-4-pentenoate hydrataseJ0A91_RS09930Not AvailablePositive2188754 - 218953627385.5
sdr family oxidoreductaseJ0A91_RS09935Not AvailablePositive2189691 - 219066533437.0
shikimate 5-dehydrogenaseJ0A91_RS09940Not AvailableNegative2190669 - 219149628493.1
tonb-dependent receptorJ0A91_RS09945Not AvailableNegative2191560 - 219386681363.4

Displaying genes 2321 – 2330 of 4958 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.