Microbulbifer aggregans strain CCB-MM1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Microbulbiferaceae

Genus

Microbulbifer

Description

Microbulbifer aggregans strain CCB-MM1 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain is classified as mesophilic, with an optimal growth temperature of 29°C, indicating it thrives in moderate temperature conditions. Genetic analysis reveals that it possesses a single replicon, suggesting a streamlined genome organization. The strain CCB-MM1 is part of the Microbulbifer genus, which is known for its role in the degradation of organic matter in marine environments. Given its aerobic requirement, M. aggregans strain CCB-MM1 likely participates in processes that involve the breakdown of complex organic compounds in oxygent-rich environments. This ability to metabolize organic material can contribute to nutrient cycling in its ecological niche, particularly within marine sediments. The accession number for this strain is NZ_CP014143.1, which provides a reference for genomic and taxonomic studies, facilitating further research into its metabolic capabilities and ecological roles. Understanding the characteristics of M. aggregans strain CCB-MM1 can be crucial for insights into microbial diversity and the functioning of ecosystems where such organisms play a pivotal role in organic matter decomposition and nutrient availability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyMicrobulbiferaceae
GenusMicrobulbifer
SpeciesMicrobulbifer aggregans
Strainstrain CCB-MM1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbulbifer aggregans strain CCB-MM1 chromosome, complete

Gene Summary

Adenine Count

797756 bp

Thymine Count

792372 bp

Guanine Count

1137482 bp

Cytosine Count

1136716 bp

Genome Length

3864326 bp

Protein-coding Genes

3301 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
1-deoxy-d-xylulose-5-phosphate reductoisomeraseAUP74_RS15625Not AvailableNegative3565885 - 356710243671.6
phosphatidate cytidylyltransferaseAUP74_RS15630Not AvailableNegative3567133 - 356797830379.1
polyprenyl diphosphate synthaseAUP74_RS15635Not AvailableNegative3568009 - 356876427847.0
ribosome recycling factorAUP74_RS15640Not AvailableNegative3568764 - 356932120664.8
ump kinaseAUP74_RS15645Not AvailableNegative3569318 - 357005526495.5
translation elongation factor tsAUP74_RS15650Not AvailableNegative3570249 - 357111230903.9
30s ribosomal protein s2AUP74_RS15655Not AvailableNegative3571234 - 357198327370.8
type i methionyl aminopeptidaseAUP74_RS15660Not AvailablePositive3572300 - 357307028256.9
[protein-pii] uridylyltransferaseAUP74_RS15665Not AvailablePositive3573182 - 3575905104340.0
succinyldiaminopimelate transaminaseAUP74_RS15670Not AvailablePositive3575938 - 357711043317.7

Displaying genes 3131 – 3140 of 3396 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.