Microbulbifer aggregans strain CCB-MM1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Microbulbiferaceae

Genus

Microbulbifer

Description

Microbulbifer aggregans strain CCB-MM1 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain is classified as mesophilic, with an optimal growth temperature of 29°C, indicating it thrives in moderate temperature conditions. Genetic analysis reveals that it possesses a single replicon, suggesting a streamlined genome organization. The strain CCB-MM1 is part of the Microbulbifer genus, which is known for its role in the degradation of organic matter in marine environments. Given its aerobic requirement, M. aggregans strain CCB-MM1 likely participates in processes that involve the breakdown of complex organic compounds in oxygent-rich environments. This ability to metabolize organic material can contribute to nutrient cycling in its ecological niche, particularly within marine sediments. The accession number for this strain is NZ_CP014143.1, which provides a reference for genomic and taxonomic studies, facilitating further research into its metabolic capabilities and ecological roles. Understanding the characteristics of M. aggregans strain CCB-MM1 can be crucial for insights into microbial diversity and the functioning of ecosystems where such organisms play a pivotal role in organic matter decomposition and nutrient availability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyMicrobulbiferaceae
GenusMicrobulbifer
SpeciesMicrobulbifer aggregans
Strainstrain CCB-MM1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbulbifer aggregans strain CCB-MM1 chromosome, complete

Gene Summary

Adenine Count

797756 bp

Thymine Count

792372 bp

Guanine Count

1137482 bp

Cytosine Count

1136716 bp

Genome Length

3864326 bp

Protein-coding Genes

3301 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-aspartate oxidaseAUP74_RS15425Not AvailablePositive3527131 - 352873859834.0
protein ygfxAUP74_RS15430Not AvailableNegative3528749 - 352921017447.5
succinate dehydrogenase assembly factor 2AUP74_RS15435Not AvailableNegative3529185 - 35294309788.57
folate-binding protein ygfzAUP74_RS15440Not AvailablePositive3529680 - 353072337536.9
uracil-dna glycosylaseAUP74_RS15445Not AvailableNegative3530802 - 353152426609.8
uracil-dna glycosylase family proteinAUP74_RS15450Not AvailableNegative3531521 - 353211122638.5
esterase-like activity of phytase family proteinAUP74_RS15455Not AvailableNegative3532108 - 353309136038.9
yajq family cyclic di-gmp-binding proteinAUP74_RS15460Not AvailableNegative3533100 - 353358218179.1
yaeq family proteinAUP74_RS15465Not AvailableNegative3533614 - 353415020232.9
lema family proteinAUP74_RS15470Not AvailablePositive3534238 - 353486723997.4

Displaying genes 3091 – 3100 of 3396 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.