Microbulbifer aggregans strain CCB-MM1

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Cellvibrionales

Family

Microbulbiferaceae

Genus

Microbulbifer

Description

Microbulbifer aggregans strain CCB-MM1 is a Gram-negative, aerobic bacterium characterized by its rod shape and non-motile nature. This strain is classified as mesophilic, with an optimal growth temperature of 29°C, indicating it thrives in moderate temperature conditions. Genetic analysis reveals that it possesses a single replicon, suggesting a streamlined genome organization. The strain CCB-MM1 is part of the Microbulbifer genus, which is known for its role in the degradation of organic matter in marine environments. Given its aerobic requirement, M. aggregans strain CCB-MM1 likely participates in processes that involve the breakdown of complex organic compounds in oxygent-rich environments. This ability to metabolize organic material can contribute to nutrient cycling in its ecological niche, particularly within marine sediments. The accession number for this strain is NZ_CP014143.1, which provides a reference for genomic and taxonomic studies, facilitating further research into its metabolic capabilities and ecological roles. Understanding the characteristics of M. aggregans strain CCB-MM1 can be crucial for insights into microbial diversity and the functioning of ecosystems where such organisms play a pivotal role in organic matter decomposition and nutrient availability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyMicrobulbiferaceae
GenusMicrobulbifer
SpeciesMicrobulbifer aggregans
Strainstrain CCB-MM1

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Microbulbifer aggregans strain CCB-MM1 chromosome, complete

Gene Summary

Adenine Count

797756 bp

Thymine Count

792372 bp

Guanine Count

1137482 bp

Cytosine Count

1136716 bp

Genome Length

3864326 bp

Protein-coding Genes

3301 genes

Non-Coding Genes

95 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cold shock domain-containing protein cspdAUP74_RS12835Not AvailablePositive2945342 - 294562610104.6
nadp-dependent isocitrate dehydrogenaseAUP74_RS12840Not AvailableNegative2945865 - 294711545338.3
rrna large subunit pseudouridine synthase eAUP74_RS12845Not AvailablePositive2947333 - 294792922230.9
trna 2-thiouridine(34) synthase mnmaAUP74_RS12850Not AvailablePositive2948048 - 294917841574.3
high frequency lysogenization protein hfldAUP74_RS12855Not AvailablePositive2949219 - 294985424087.3
adenylosuccinate lyaseAUP74_RS12860Not AvailablePositive2949871 - 295124450923.6
cupin domain-containing proteinAUP74_RS12865Not AvailablePositive2951410 - 295256443014.9
gnat family n-acetyltransferaseAUP74_RS12870Not AvailablePositive2952566 - 295299115984.1
hypothetical proteinAUP74_RS12875Not AvailablePositive2952984 - 295350520177.1
malate synthase gAUP74_RS12880Not AvailableNegative2953509 - 295568680400.6

Displaying genes 2571 – 2580 of 3396 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.