Erwinia tracheiphila strain MDcuke

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Erwiniaceae

Genus

Erwinia

Description

Erwinia tracheiphila strain MDcuke is a rod-shaped bacterium characterized by the presence of flagella, which contribute to its motility. This strain possesses two replicons, indicating that it has two distinct circular DNA molecules, a feature that may play a role in its adaptability and genetic diversity. The strain is cataloged under the accessions NZ_CP013971.1 and NZ_CP013972.1, which provide a means for researchers to access its genomic data for further study. Erwinia tracheiphila is known for its role as a plant pathogen, specifically affecting cucurbit crops such as cucumbers and melons. The virulence of this bacterium can lead to significant agricultural challenges, including crop loss. The flagella may enhance the bacterium's ability to colonize host plants and evade plant defense mechanisms, contributing to its pathogenicity. An ecological insight into Erwinia tracheiphila strain MDcuke is its potential impact on agricultural ecosystems. As a pathogen, it influences not only the health of cucurbit crops but also the dynamics of the surrounding environment, including interactions with other microorganisms and the overall biodiversity of the plant community. Understanding the genetic and biological traits of this strain can provide valuable information for developing management strategies to mitigate its effects on agriculture and maintain ecosystem stability.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyErwiniaceae
GenusErwinia
SpeciesErwinia tracheiphila
Strainstrain MDcuke

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Erwinia tracheiphila strain MDcuke
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Erwinia tracheiphila strain MDcuke


Gene Summary

Adenine Count

12502 bp

Thymine Count

12503 bp

Guanine Count

10872 bp

Cytosine Count

12495 bp

Genome Length

48472 bp

Protein-coding Genes

60 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phospholipase d family proteinAV903_RS26550Not AvailableNegative17355 - 1791820725.1
duf2913 family proteinAV903_RS26555Not AvailablePositive18043 - 1869025263.9
conjugative transfer relaxase/helicase traiAV903_RS26560Not AvailableNegative18700 - 23922189666.0
type iv conjugative transfer system coupling protein tradAV903_RS26565Not AvailableNegative23922 - 2606080678.6
lytic transglycosylase domain-containing proteinAV903_RS26570Not AvailableNegative26082 - 2654917474.4
hypothetical proteinAV903_RS26575Not AvailableNegative26649 - 2747629952.7
conjugal transfer mating-pair stabilization protein tragAV903_RS26580Not AvailableNegative27469 - 30312102056.0
conjugal transfer pilus assembly protein trahAV903_RS26585Not AvailableNegative30315 - 3167949394.0
type-f conjugative transfer system pilin assembly thiol-disulfide isomerase trbbAV903_RS26590Not AvailableNegative31676 - 3221219706.7
type-f conjugative transfer system pilin assembly protein trafAV903_RS26595Not AvailableNegative32398 - 3318329214.4

Displaying genes 31 – 40 of 165 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.