Bradyrhizobium sp. CCGE-LA001

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Bradyrhizobium

Description

Bradyrhizobium sp. CCGE-LA001 is a rod-shaped bacterium characterized by the presence of flagella, which facilitate its motility. This species is notable for having a single replicon, indicating a streamlined genomic structure that may contribute to its adaptability and efficiency in various environments. The genomic information is cataloged under the accession NZ_CP013949.1. Bradyrhizobium species are known for their role in nitrogen fixation, forming symbiotic relationships with leguminous plants. This capability not only enhances soil fertility but also plays a crucial role in sustainable agriculture by reducing the dependence on synthetic fertilizers. The presence of flagella in Bradyrhizobium sp. CCGE-LA001 suggests that it may be well-equipped to navigate its environment, potentially enhancing its interactions with host plants and contributing to its ecological success. In summary, the combination of its rod shape, motility via flagella, and genomic features positions Bradyrhizobium sp. CCGE-LA001 as an important player in symbiotic nitrogen fixation, highlighting its potential significance in agricultural ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusBradyrhizobium
SpeciesBradyrhizobium sp. CCGE-LA001
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bradyrhizobium sp. CCGE-LA001 chromosome, complete genome.

Gene Summary

Adenine Count

1424037 bp

Thymine Count

1429953 bp

Guanine Count

2486778 bp

Cytosine Count

2492731 bp

Genome Length

7833499 bp

Protein-coding Genes

7206 genes

Non-Coding Genes

55 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lysr substrate-binding domain-containing proteinBCCGELA001_RS13930P55576Negative2993915 - 299480232809.6
sdr family nad(p)-dependent oxidoreductaseBCCGELA001_RS13935P55575Positive2994935 - 299569626091.9
transketolaseBCCGELA001_RS13940P55574Positive2995717 - 299655630211.2
transketolase family proteinBCCGELA001_RS13945Not AvailablePositive2996553 - 299756336457.2
gfa family proteinBCCGELA001_RS13950Not AvailableNegative2997573 - 299798315262.2
peptide-methionine (s)-s-oxide reductaseBCCGELA001_RS13955Not AvailableNegative2998109 - 299918738942.3
iclr family transcriptional regulatorBCCGELA001_RS13960Not AvailableNegative2999385 - 300018528556.5
aminotransferase class v-fold plp-dependent enzymeBCCGELA001_RS13965Not AvailablePositive3000361 - 300152142388.1
amino acid abc transporter substrate-binding proteinBCCGELA001_RS13970Not AvailablePositive3001542 - 300245032295.8
amino acid abc transporter permeaseBCCGELA001_RS13975Not AvailablePositive3002519 - 300331328734.3

Displaying genes 2841 – 2850 of 7261 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

444 records
Export CSV
Compound search
Mass search
Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

Clear
Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002583-(carbamoylamino)propanoateC4H7N2O3Chemical structure of 3-(carbamoylamino)propanoateNot available
Average131.112Da
Monoisotopic131.046215673Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000333(1R,4R)-bornane-2,5-dioneC10H14O2Chemical structure of (1R,4R)-bornane-2,5-dioneNot available
Average166.22Da
Monoisotopic166.0993797Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da

Displaying 1–10 of 444 metabolites

Health Effects

No health effects information available for this bacterium.