Pseudomonas fragi strain P121

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fragi strain P121 is a psychrotolerant bacterium primarily found in cold environments, which includes habitats such as cutting and processing laboratories, leaves of cold-adapted plants, meat, and milk processing facilities. This adaptability to low temperatures allows P. fragi to thrive in environments where many other bacteria may not, making it a significant organism in food processing and microbiological studies. The strain is characterized by having a single replicon, which is indicative of its genetic structure. This can influence its metabolic capabilities and responses to environmental stressors. The genomic data for Pseudomonas fragi strain P121 can be accessed under the accession number NZ_CP013861.1, which provides a valuable resource for further research into its genetic makeup and functional traits. In ecological contexts, the presence of Pseudomonas fragi in food processing environments highlights its potential role in food spoilage, particularly in refrigerated products. Understanding its characteristics can be vital for developing strategies to manage microbial populations in food safety and quality control. Furthermore, the ability of P. fragi to colonize cold-adapted plant surfaces suggests a potential ecological role in nutrient cycling and plant interactions in cold habitats. This underscores the importance of studying psychrotolerant bacteria like Pseudomonas fragi in both food science and ecological research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fragi
Strainstrain P121

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas fragi strain P121
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatcutting and processing laboratories; leaves of cold-adapted plants; meat; milk; processing facilities
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas fragi strain P121 chromosome, complete genome.

Gene Summary

Adenine Count

1055364 bp

Thymine Count

1055101 bp

Guanine Count

1494902 bp

Cytosine Count

1496442 bp

Genome Length

5101809 bp

Protein-coding Genes

4473 genes

Non-Coding Genes

178 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
f0f1 atp synthase subunit alphaAV641_RS16560Not AvailablePositive3698600 - 369893712375.8
cysteine hydrolase family proteinAV641_RS16565Not AvailablePositive3699040 - 369960020705.7
acyltransferase family proteinAV641_RS16570Not AvailablePositive3699851 - 370175270347.3
Trna-lysNot AvailableNot AvailablePositive3701964 - 3702039Not Available
7-cyano-7-deazaguanine synthase quecAV641_RS16580Not AvailableNegative3702114 - 370280624516.1
7-carboxy-7-deazaguanine synthase queeAV641_RS16585Not AvailableNegative3702808 - 370345524102.8
tol-pal system protein ybgfAV641_RS16590Not AvailableNegative3703619 - 370443728901.9
peptidoglycan-associated lipoprotein palAV641_RS16595Not AvailableNegative3704444 - 370494417744.0
tol-pal system beta propeller repeat protein tolbAV641_RS16600Not AvailableNegative3705000 - 370625045691.3
cell envelope integrity protein tolaAV641_RS16605Not AvailableNegative3706298 - 370739239403.5

Displaying genes 3381 – 3390 of 4651 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm0018999(S)-3-Hydroxybutanoyl-CoAC25H42N7O18P3SChemical structure of (S)-3-Hydroxybutanoyl-CoANULL
Average853.623Da
Monoisotopic853.151987801Da
BASm0034745glycodeoxycholic acidC26H43NO5Chemical structure of glycodeoxycholic acidNULL
Average449.632Da
Monoisotopic449.314123489Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.