Pseudomonas fragi strain P121

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fragi strain P121 is a psychrotolerant bacterium primarily found in cold environments, which includes habitats such as cutting and processing laboratories, leaves of cold-adapted plants, meat, and milk processing facilities. This adaptability to low temperatures allows P. fragi to thrive in environments where many other bacteria may not, making it a significant organism in food processing and microbiological studies. The strain is characterized by having a single replicon, which is indicative of its genetic structure. This can influence its metabolic capabilities and responses to environmental stressors. The genomic data for Pseudomonas fragi strain P121 can be accessed under the accession number NZ_CP013861.1, which provides a valuable resource for further research into its genetic makeup and functional traits. In ecological contexts, the presence of Pseudomonas fragi in food processing environments highlights its potential role in food spoilage, particularly in refrigerated products. Understanding its characteristics can be vital for developing strategies to manage microbial populations in food safety and quality control. Furthermore, the ability of P. fragi to colonize cold-adapted plant surfaces suggests a potential ecological role in nutrient cycling and plant interactions in cold habitats. This underscores the importance of studying psychrotolerant bacteria like Pseudomonas fragi in both food science and ecological research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fragi
Strainstrain P121

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas fragi strain P121
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatcutting and processing laboratories; leaves of cold-adapted plants; meat; milk; processing facilities
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas fragi strain P121 chromosome, complete genome.

Gene Summary

Adenine Count

1055364 bp

Thymine Count

1055101 bp

Guanine Count

1494902 bp

Cytosine Count

1496442 bp

Genome Length

5101809 bp

Protein-coding Genes

4473 genes

Non-Coding Genes

178 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
transporter substrate-binding domain-containing proteinAV641_RS06925Not AvailableNegative1464182 - 1467802134021.0
response regulator transcription factorAV641_RS06930Not AvailableNegative1467811 - 146843723378.7
deoxyguanosinetriphosphate triphosphohydrolaseAV641_RS06935Not AvailableNegative1468807 - 147013850178.9
hypothetical proteinAV641_RS06940Not AvailableNegative1470288 - 147063212868.0
phage holin family proteinAV641_RS06945Not AvailableNegative1470629 - 147100613530.8
yqjd family proteinAV641_RS06950Not AvailableNegative1471008 - 147132211220.3
monovalent cation:proton antiporter-2 (cpa2) family proteinAV641_RS06955Not AvailableNegative1471464 - 147320062658.5
glutaredoxin family proteinAV641_RS06960Not AvailablePositive1473474 - 14737108714.55
pseudouridine synthaseAV641_RS06965Not AvailablePositive1473768 - 147465833739.5
ygdi/ygdr family lipoproteinAV641_RS06970Not AvailableNegative1474726 - 14749478043.66

Displaying genes 1481 – 1490 of 4651 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm0018999(S)-3-Hydroxybutanoyl-CoAC25H42N7O18P3SChemical structure of (S)-3-Hydroxybutanoyl-CoANULL
Average853.623Da
Monoisotopic853.151987801Da
BASm0034745glycodeoxycholic acidC26H43NO5Chemical structure of glycodeoxycholic acidNULL
Average449.632Da
Monoisotopic449.314123489Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.