Pseudomonas fragi strain P121

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas fragi strain P121 is a psychrotolerant bacterium primarily found in cold environments, which includes habitats such as cutting and processing laboratories, leaves of cold-adapted plants, meat, and milk processing facilities. This adaptability to low temperatures allows P. fragi to thrive in environments where many other bacteria may not, making it a significant organism in food processing and microbiological studies. The strain is characterized by having a single replicon, which is indicative of its genetic structure. This can influence its metabolic capabilities and responses to environmental stressors. The genomic data for Pseudomonas fragi strain P121 can be accessed under the accession number NZ_CP013861.1, which provides a valuable resource for further research into its genetic makeup and functional traits. In ecological contexts, the presence of Pseudomonas fragi in food processing environments highlights its potential role in food spoilage, particularly in refrigerated products. Understanding its characteristics can be vital for developing strategies to manage microbial populations in food safety and quality control. Furthermore, the ability of P. fragi to colonize cold-adapted plant surfaces suggests a potential ecological role in nutrient cycling and plant interactions in cold habitats. This underscores the importance of studying psychrotolerant bacteria like Pseudomonas fragi in both food science and ecological research.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas fragi
Strainstrain P121

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas fragi strain P121
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatcutting and processing laboratories; leaves of cold-adapted plants; meat; milk; processing facilities
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas fragi strain P121 chromosome, complete genome.

Gene Summary

Adenine Count

1055364 bp

Thymine Count

1055101 bp

Guanine Count

1494902 bp

Cytosine Count

1496442 bp

Genome Length

5101809 bp

Protein-coding Genes

4473 genes

Non-Coding Genes

178 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dtmp kinaseAV641_RS06625Not AvailablePositive1406705 - 140733722986.6
dna polymerase iii subunit delta'AV641_RS06630Not AvailablePositive1407330 - 140831635956.9
tatd family hydrolaseAV641_RS06635Not AvailablePositive1408349 - 140913428659.0
tetr/acrr family transcriptional regulatorAV641_RS06640Not AvailablePositive1409491 - 141013225057.1
gtp 3',8-cyclase moaaAV641_RS06645Not AvailablePositive1410228 - 141119635253.2
sdr family oxidoreductaseAV641_RS06650Not AvailablePositive1411493 - 141231129421.6
substrate-binding domain-containing proteinAV641_RS06655Not AvailablePositive1412372 - 141337635682.9
l-arabinose abc transporter atp-binding protein aragAV641_RS06660Not AvailablePositive1413389 - 141492155464.9
l-arabinose abc transporter permease arahAV641_RS06665Not AvailablePositive1414947 - 141591534155.1
duf4823 domain-containing proteinAV641_RS06670Not AvailablePositive1416029 - 141663422167.4

Displaying genes 1421 – 1430 of 4651 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm0018999(S)-3-Hydroxybutanoyl-CoAC25H42N7O18P3SChemical structure of (S)-3-Hydroxybutanoyl-CoANULL
Average853.623Da
Monoisotopic853.151987801Da
BASm0034745glycodeoxycholic acidC26H43NO5Chemical structure of glycodeoxycholic acidNULL
Average449.632Da
Monoisotopic449.314123489Da

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.