Herbaspirillum rubrisubalbicans M1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum rubrisubalbicans M1 is a Gram-negative bacterium characterized by the presence of flagella, which suggests motility. This species has been documented with a single replicon, indicating a relatively straightforward genomic organization. The genomic sequence for this strain is accessible under the accession number NZ_CP013737.1. As a member of the genus Herbaspirillum, which encompasses various nitrogen-fixing bacteria, H. rubrisubalbicans M1 may play a role in promoting plant growth through the enhancement of nitrogen availability in the soil. This is particularly significant in agricultural contexts, as nitrogen is a critical nutrient for plant development. The flagellar motility observed in this species could also facilitate colonization of plant roots, further supporting its ecological role in symbiotic relationships with plants. In summary, the combination of its Gram-negative classification, flagellar presence, and genomic information positions Herbaspirillum rubrisubalbicans M1 as an organism of interest in both microbiological studies and agricultural applications. Its potential for nitrogen fixation underscores its ecological importance, contributing to soil health and fertility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum rubrisubalbicans
StrainM1

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbaspirillum rubrisubalbicans M1 chromosome, complete genome.

Gene Summary

Adenine Count

1079394 bp

Thymine Count

1079406 bp

Guanine Count

1725534 bp

Cytosine Count

1726927 bp

Genome Length

5611261 bp

Protein-coding Genes

4811 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hoxn/hupn/nixa family nickel/cobalt transporterHRUBRI_RS11760P23516Positive2726311 - 272737839390.2
nickel-responsive transcriptional regulator nikrHRUBRI_RS11765Q01RT6Positive2727438 - 272791117671.0
alpha/beta hydrolaseHRUBRI_RS11770Not AvailableNegative2727966 - 272905741428.9
duf2946 domain-containing proteinHRUBRI_RS24435Not AvailableNegative2729253 - 272963913297.3
copper homeostasis membrane protein copdHRUBRI_RS11780P76278Negative2729795 - 273066731532.2
copper homeostasis periplasmic binding protein copcHRUBRI_RS11785P0AA58Negative2730676 - 273104112755.5
purine nucleoside permeaseHRUBRI_RS11790O74493Positive2731364 - 273241038161.1
acyl-coa dehydrogenase family proteinHRUBRI_RS11795Q845S8Positive2732582 - 273376341861.5
eal domain-containing proteinHRUBRI_RS11800Not AvailablePositive2733861 - 273650397507.9
hypothetical proteinHRUBRI_RS11805Not AvailableNegative2736535 - 273683410961.3

Displaying genes 2391 – 2400 of 4922 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

300 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 300 metabolites

Health Effects

No health effects information available for this bacterium.