Herbaspirillum rubrisubalbicans M1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum rubrisubalbicans M1 is a Gram-negative bacterium characterized by the presence of flagella, which suggests motility. This species has been documented with a single replicon, indicating a relatively straightforward genomic organization. The genomic sequence for this strain is accessible under the accession number NZ_CP013737.1. As a member of the genus Herbaspirillum, which encompasses various nitrogen-fixing bacteria, H. rubrisubalbicans M1 may play a role in promoting plant growth through the enhancement of nitrogen availability in the soil. This is particularly significant in agricultural contexts, as nitrogen is a critical nutrient for plant development. The flagellar motility observed in this species could also facilitate colonization of plant roots, further supporting its ecological role in symbiotic relationships with plants. In summary, the combination of its Gram-negative classification, flagellar presence, and genomic information positions Herbaspirillum rubrisubalbicans M1 as an organism of interest in both microbiological studies and agricultural applications. Its potential for nitrogen fixation underscores its ecological importance, contributing to soil health and fertility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum rubrisubalbicans
StrainM1

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbaspirillum rubrisubalbicans M1 chromosome, complete genome.

Gene Summary

Adenine Count

1079394 bp

Thymine Count

1079406 bp

Guanine Count

1725534 bp

Cytosine Count

1726927 bp

Genome Length

5611261 bp

Protein-coding Genes

4811 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
smr/muts family proteinHRUBRI_RS09005C4L8D4Negative2074185 - 207483824129.0
i78 family peptidase inhibitorHRUBRI_RS09010Not AvailableNegative2074920 - 207525811576.0
thioredoxin-disulfide reductaseHRUBRI_RS09015Q9KSS4Negative2075404 - 207635733942.3
dna translocase ftskHRUBRI_RS09020Q8XWX9Positive2076766 - 207910884950.5
outer membrane lipoprotein chaperone lolaHRUBRI_RS09025Q46Y23Positive2079229 - 207996026410.2
ferredoxin fdxaHRUBRI_RS09030P0A122Negative2080031 - 208036912191.9
replication-associated recombination protein aHRUBRI_RS09035P39918Positive2080618 - 208192247847.9
hth domain-containing proteinHRUBRI_RS09040Not AvailablePositive2082029 - 208230710558.0
dna adenine methylaseHRUBRI_RS09045Not AvailablePositive2082304 - 208321533928.6
hypothetical proteinHRUBRI_RS09050Not AvailableNegative2083216 - 208392026504.4

Displaying genes 1831 – 1840 of 4922 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

300 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 300 metabolites

Health Effects

No health effects information available for this bacterium.