Herbaspirillum rubrisubalbicans M1

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Herbaspirillum

Description

Herbaspirillum rubrisubalbicans M1 is a Gram-negative bacterium characterized by the presence of flagella, which suggests motility. This species has been documented with a single replicon, indicating a relatively straightforward genomic organization. The genomic sequence for this strain is accessible under the accession number NZ_CP013737.1. As a member of the genus Herbaspirillum, which encompasses various nitrogen-fixing bacteria, H. rubrisubalbicans M1 may play a role in promoting plant growth through the enhancement of nitrogen availability in the soil. This is particularly significant in agricultural contexts, as nitrogen is a critical nutrient for plant development. The flagellar motility observed in this species could also facilitate colonization of plant roots, further supporting its ecological role in symbiotic relationships with plants. In summary, the combination of its Gram-negative classification, flagellar presence, and genomic information positions Herbaspirillum rubrisubalbicans M1 as an organism of interest in both microbiological studies and agricultural applications. Its potential for nitrogen fixation underscores its ecological importance, contributing to soil health and fertility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusHerbaspirillum
SpeciesHerbaspirillum rubrisubalbicans
StrainM1

Profile

Physiology
Gram staining propertiesGram-negative
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Herbaspirillum rubrisubalbicans M1 chromosome, complete genome.

Gene Summary

Adenine Count

1079394 bp

Thymine Count

1079406 bp

Guanine Count

1725534 bp

Cytosine Count

1726927 bp

Genome Length

5611261 bp

Protein-coding Genes

4811 genes

Non-Coding Genes

111 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinHRUBRI_RS05525Not AvailablePositive1282772 - 128468569668.7
cest family type iii secretion system chaperoneHRUBRI_RS05530Not AvailablePositive1284900 - 128539719047.7
hypothetical proteinHRUBRI_RS05535Not AvailablePositive1285558 - 128788285447.0
mfs transporterHRUBRI_RS05540P76350Negative1288004 - 128931747461.4
l-2-hydroxyglutarate oxidaseHRUBRI_RS05545A8X2R1Negative1289419 - 129062443838.8
lysr family transcriptional regulatorHRUBRI_RS05550P48271Positive1290784 - 129170733413.4
hypothetical proteinHRUBRI_RS24745Not AvailablePositive1291914 - 12921448640.13
type vi secretion system vgr family proteinHRUBRI_RS05560Q9I737Positive1292222 - 129437280264.5
duf2169 domain-containing proteinHRUBRI_RS05565Not AvailablePositive1294431 - 129584051748.1
duf4150 domain-containing proteinHRUBRI_RS05570Not AvailablePositive1295932 - 129739551096.2

Displaying genes 1171 – 1180 of 4922 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

300 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002543-hydroxy-2-methylpropanoateC4H7O3Chemical structure of 3-hydroxy-2-methylpropanoateNot available
Average103.098Da
Monoisotopic103.0400677Da
BASm00002634-(hydroxymethyl)benzenesulfonateC7H7O4SChemical structure of 4-(hydroxymethyl)benzenesulfonateNot available
Average187.19Da
Monoisotopic187.007053459Da
BASm00002654-formylbenzenesulfonateC7H5O4SChemical structure of 4-formylbenzenesulfonateNot available
Average185.17Da
Monoisotopic184.991403395Da
BASm0000288aminohydroquinoneC6H7NO2Chemical structure of aminohydroquinoneNot available
Average125.127Da
Monoisotopic125.0476785Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da

Displaying 1–10 of 300 metabolites

Health Effects

No health effects information available for this bacterium.