Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1 is a rod-shaped bacterium notable for its distinct genetic characteristics. This strain possesses two replicons, which are essential components for its genetic stability and replication processes. The complete genomic information for this strain can be accessed through the following accession numbers: NZ_CP013342.1 and NZ_CP013343.1. The rod shape of Sphingopyxis terrae subsp. terrae is typical of many bacteria and can influence its motility and environmental interactions. This morphology may facilitate its ability to colonize various substrates, contributing to its ecological niche. In terms of its ecological role, Sphingopyxis species are often associated with soil environments, where they may play a part in the degradation of organic compounds. The presence of multiple replicons in strain 203-1 suggests a genetic adaptability that could enhance its survival and metabolic versatility in diverse soil habitats. This adaptability is significant, as it may allow Sphingopyxis terrae subsp. terrae to thrive in environments with varying nutrient availability and to participate effectively in biogeochemical cycles. In summary, Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1 is characterized by its rod shape and possession of two replicons, traits that may contribute to its ecological functions in soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis terrae
Strainsubsp. terrae NBRC 15098 strain 203-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1

Gene Summary

Adenine Count

705454 bp

Thymine Count

704229 bp

Guanine Count

1282657 bp

Cytosine Count

1286745 bp

Genome Length

3979087 bp

Protein-coding Genes

3813 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trigger factorAOA14_RS16455Not AvailableNegative3459591 - 346117757649.5
Trna-leuNot AvailableNot AvailablePositive3461266 - 3461350Not Available
hypothetical proteinAOA14_RS16465Not AvailablePositive3461520 - 34617297171.19
amidohydrolaseAOA14_RS16470Not AvailablePositive3461790 - 346348461340.1
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatbAOA14_RS16475Not AvailableNegative3463522 - 346498853216.1
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gataAOA14_RS16480Not AvailableNegative3465086 - 346656751882.6
asp-trna(asn)/glu-trna(gln) amidotransferase subunit gatcAOA14_RS16485Not AvailableNegative3466695 - 346699710635.7
duf4153 domain-containing proteinAOA14_RS16490Not AvailableNegative3467099 - 346887764443.7
duf3089 domain-containing proteinAOA14_RS16495Not AvailablePositive3468957 - 347024644937.4
holliday junction resolvase ruvxAOA14_RS16500Not AvailablePositive3470305 - 347076315993.5

Displaying genes 3351 – 3360 of 3869 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.