Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1 is a rod-shaped bacterium notable for its distinct genetic characteristics. This strain possesses two replicons, which are essential components for its genetic stability and replication processes. The complete genomic information for this strain can be accessed through the following accession numbers: NZ_CP013342.1 and NZ_CP013343.1. The rod shape of Sphingopyxis terrae subsp. terrae is typical of many bacteria and can influence its motility and environmental interactions. This morphology may facilitate its ability to colonize various substrates, contributing to its ecological niche. In terms of its ecological role, Sphingopyxis species are often associated with soil environments, where they may play a part in the degradation of organic compounds. The presence of multiple replicons in strain 203-1 suggests a genetic adaptability that could enhance its survival and metabolic versatility in diverse soil habitats. This adaptability is significant, as it may allow Sphingopyxis terrae subsp. terrae to thrive in environments with varying nutrient availability and to participate effectively in biogeochemical cycles. In summary, Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1 is characterized by its rod shape and possession of two replicons, traits that may contribute to its ecological functions in soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis terrae
Strainsubsp. terrae NBRC 15098 strain 203-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1

Gene Summary

Adenine Count

705454 bp

Thymine Count

704229 bp

Guanine Count

1282657 bp

Cytosine Count

1286745 bp

Genome Length

3979087 bp

Protein-coding Genes

3813 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna primaseAOA14_RS12690Not AvailableNegative2640646 - 264252668497.9
giy-yig nuclease family proteinAOA14_RS19325Not AvailableNegative2642523 - 264296016571.7
gatb/yqey domain-containing proteinAOA14_RS12695Not AvailableNegative2643074 - 264352616125.6
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunitAOA14_RS12700Not AvailablePositive2643658 - 264491743552.7
hypothetical proteinAOA14_RS19830Not AvailablePositive2644947 - 26452199704.5
carbamoyl-phosphate synthase large subunitAOA14_RS12705Not AvailablePositive2645219 - 2648539119059.0
transcription elongation factor greaAOA14_RS12710Not AvailablePositive2648637 - 264911317230.4
rhomboid family intramembrane serine proteaseAOA14_RS12715Not AvailablePositive2649127 - 264976222036.7
nudix hydrolaseAOA14_RS12720Not AvailableNegative2649766 - 265031419467.2
tpm domain-containing proteinAOA14_RS12725Not AvailableNegative2650343 - 265102324871.2

Displaying genes 2581 – 2590 of 3869 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.