Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingopyxidaceae

Genus

Sphingopyxis

Description

Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1 is a rod-shaped bacterium notable for its distinct genetic characteristics. This strain possesses two replicons, which are essential components for its genetic stability and replication processes. The complete genomic information for this strain can be accessed through the following accession numbers: NZ_CP013342.1 and NZ_CP013343.1. The rod shape of Sphingopyxis terrae subsp. terrae is typical of many bacteria and can influence its motility and environmental interactions. This morphology may facilitate its ability to colonize various substrates, contributing to its ecological niche. In terms of its ecological role, Sphingopyxis species are often associated with soil environments, where they may play a part in the degradation of organic compounds. The presence of multiple replicons in strain 203-1 suggests a genetic adaptability that could enhance its survival and metabolic versatility in diverse soil habitats. This adaptability is significant, as it may allow Sphingopyxis terrae subsp. terrae to thrive in environments with varying nutrient availability and to participate effectively in biogeochemical cycles. In summary, Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1 is characterized by its rod shape and possession of two replicons, traits that may contribute to its ecological functions in soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingopyxidaceae
GenusSphingopyxis
SpeciesSphingopyxis terrae
Strainsubsp. terrae NBRC 15098 strain 203-1

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingopyxis terrae subsp. terrae NBRC 15098 strain 203-1

Gene Summary

Adenine Count

705454 bp

Thymine Count

704229 bp

Guanine Count

1282657 bp

Cytosine Count

1286745 bp

Genome Length

3979087 bp

Protein-coding Genes

3813 genes

Non-Coding Genes

51 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fecr domain-containing proteinAOA14_RS01080Not AvailableNegative227788 - 22879837475.0
rna polymerase sigma factorAOA14_RS01085Not AvailableNegative228791 - 22948627022.2
hepn domain-containing proteinAOA14_RS01090Not AvailableNegative229629 - 23056136057.7
sigma factor-like helix-turn-helix dna-binding proteinAOA14_RS01095Not AvailableNegative230591 - 23111518867.6
dna -binding domain-containing proteinAOA14_RS19555Not AvailablePositive231887 - 23238718899.7
lytic transglycosylase domain-containing proteinAOA14_RS01100Not AvailableNegative232457 - 23288815997.0
mobf family relaxaseAOA14_RS01105Not AvailableNegative233017 - 235962108483.0
type iv secretion system dna-binding domain-containing proteinAOA14_RS01110Not AvailableNegative235959 - 23802275182.4
ribbon-helix-helix protein, copg familyAOA14_RS01115Not AvailableNegative238019 - 23834211148.3
hypothetical proteinAOA14_RS01120Not AvailablePositive238545 - 23913521941.5

Displaying genes 221 – 230 of 3869 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.